Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04180 ATGGATACGCCAGAGAGAAACCAAATCACCACCGCTCTCTCTAAGTTCGAGGATTCACCAGTATTCAACTATATTAGTAATTTATCTCCTATACGGCCTGTTAAATCTGCTCATATTACTCAAACCTTCAATTCGCTTAGCTTTTCATCTCCTCCGTCTGTTTTCACATCACCACATGTCACCTCTTTCAAGGAGTCCAGATTCCTACGCAGACATAACCCACCGAGCCCGTTGAAGCCTAAGGATTCATCTGAAGATCTAAATAAAGTGTACTCAAATGAAGAGGCTATTGCAGATTCTACACTTTCACATCATAACTCAAGTGAGTTACATGAAAGTGCTGATAAAGGGATTTCAGTAGGAGATGTTTCTATTGAGTTATCTAGCGAACAAGCGAAATTCTCTGATGAGCTACCACAGGCGTTACAGTATAATTGTGGTAGTCCTGGCTATAATCCTCCACTTTGTTGTGATGAGGCTAACTCTCTTTTGGAATTGCCTGGAGAAGCTGTGTCTGATGTTGGGTTTGTTCAGGAAGGTTGTAAGACAGATTCAGATGAGCCTGAGTTGCATCTTCAAGGAACAAGTCAAGTTGATCCAAAGGGTGAAGGCTCAGACTGTGATTGGGATGGTTTAATTCACCATGGTTCTGATATGTTAATTGAAGCAGAAGCTTTTAAGGGTCTAACGCAGAAACCACTGGGATCTTCTATGAGACTTTGTGATTTTGTGCCCCTTCAACAATCTGCCAGTTTTAATGATCAGAAAATACACATGGTTGATTCAGTTGCTCCTGGTTCTGAACATGAAATTGAAAATCATTGTTCTGAGCTAGTTGTCGAGACCGGCACTGATCATACGCAGGACAATCTTGGTGATGGTTCTTTCATGACTAGCAATCCAAATGAGAAAATGGACAATCAGCTTGTTTCTGTCACACACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCTGGTGTACGAAAGAACTCCGATGATAATTCAAACACTGGCTCTAGTACACCACAGTCTGAAGTAAGGAATTCTGCTGATGAAAAACAACTGCTCCCTGCAAAACGGAATGCAAATTCACAAAAATGCATTTTACCGGGTATCGGCTTACACTTGAATGCACTTGCTCCCTTAAAGGATGGCTCAGGAATGCAGAACAGAAATTTAACTTCTGGAAGACAACTCAGTCTCACCAACTCTACTTCCTTGCTACTCTCTGCATGCCAAGAACATCAGCATCTATCGATTGTATCTGTATCAGTATCCTCTGAAAGAGAATTGGACCTATCAGGCAATGAGGTTCAGCCTGCTGAAGATTCTTCCCTGGTACCAGCTTACATGGCTGATGAAGATTTCAATCCGAATAGCCCCAAAAAGAAAAAGCGTAAGTCAGAGCCAGTTGGAGATACTGAGGGCTGCAAACGCTGTAATTGCAAGAAATCAAAGTGCCTGAAGCTTTACTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTGTTCATGAAGATACTGTTCTCCAAACTCGCAAGCAAATTGAATCTCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTGCTGACTCTGTGCCTGAAATTGGGATTGACCCAAACAAAACTCCAGCTTCAGCCCGCCATAAAAGAGGGTGCAACTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGCAGATGTGAAGGGTGCAAGAATGCATTCGGTAGAAAGGATGGTTCTACTTCTATGGCGACAGAAGTCGAGACAGAAGAAGAAACAGAAACTAGTGACAAGGGTGTGGAGGAAAAAGCTATTCAGAAAACTGAATTTCAGAATATCGAAGATCATTTGGATTCTTCCATGGCCGCAACACCATTACGGATTTCCAGGCCAATGCTTCCGATGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCACCGGTTCTGGATATTTTACCAGCCAAAAGCTTGCGAAACCAAATCCTCTTTGGTCTCAATCCAAGTCTTTTCAGACTGTTGCAGATGATGAAATGCCAGAAATTCTTCGTGGTGATACTTCTCCTATCGCGTGCATCAAAACTTCATCTCCAAATGGGAAGAGAGTCTCCTCTCCTAATTGTGAAATAAGATCATCTCCTACTCGTAGAGGTGGCAGAAAATTGATATTACAATCTATTCCTTCATTTCCTTCTCTCACCCCTCGCCCTTAG 2310 0.4286 MDTPERNQITTALSKFEDSPVFNYISNLSPIRPVKSAHITQTFNSLSFSSPPSVFTSPHVTSFKESRFLRRHNPPSPLKPKDSSEDLNKVYSNEEAIADSTLSHHNSSELHESADKGISVGDVSIELSSEQAKFSDELPQALQYNCGSPGYNPPLCCDEANSLLELPGEAVSDVGFVQEGCKTDSDEPELHLQGTSQVDPKGEGSDCDWDGLIHHGSDMLIEAEAFKGLTQKPLGSSMRLCDFVPLQQSASFNDQKIHMVDSVAPGSEHEIENHCSELVVETGTDHTQDNLGDGSFMTSNPNEKMDNQLVSVTHRGIRRRCLDFEMAGVRKNSDDNSNTGSSTPQSEVRNSADEKQLLPAKRNANSQKCILPGIGLHLNALAPLKDGSGMQNRNLTSGRQLSLTNSTSLLLSACQEHQHLSIVSVSVSSERELDLSGNEVQPAEDSSLVPAYMADEDFNPNSPKKKKRKSEPVGDTEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPVHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPEIGIDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSTSMATEVETEEETETSDKGVEEKAIQKTEFQNIEDHLDSSMAATPLRISRPMLPMPFSSKGKPPRSFVTTITGSGYFTSQKLAKPNPLWSQSKSFQTVADDEMPEILRGDTSPIACIKTSSPNGKRVSSPNCEIRSSPTRRGGRKLILQSIPSFPSLTPRP 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04180 769 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 767 IPR044522 GO:0003700
Vivi2g04180 769 ProSiteProfiles CRC domain profile. 478 603 IPR005172 -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 722 744 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 453 478 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 721 769 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 328 352 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 459 478 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 331 352 - -
Vivi2g04180 769 MobiDBLite consensus disorder prediction 183 203 - -
Vivi2g04180 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 480 515 IPR005172 -
Vivi2g04180 769 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 566 601 IPR005172 -
Vivi2g04180 769 SMART CXC_2 477 518 IPR033467 -
Vivi2g04180 769 SMART CXC_2 563 604 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04180 Vivi-Chr2 155001331 155005921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04180 16 768 CPP Transcription Factor Family AT4G14770 43.590 3.89e-156 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vivi2g04180 TCR 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04180 - - mtr:11423771 1199.11