Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04121 ATGATGAGAACACCAAGCAATGATGAAAGTGGTTTGAAGAAAGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCATATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAACTTGCAGGATTGAATAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATTATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAACACATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGCTAATGCAAATGGGTTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAACAATCTTCAACAAATAATATTGAATGCTGCAAATATTGTCACTAATTGTGACATAAATAATGTTCTAAGGTTACAACAATATTCACAGCTTCCACAATGTTTGATAAATGATGTTTTGGGATTTAATCATAACATGCAAAATTTCTATGATGGTTCCAATATTGGTTTTTCTTCTCAAATAATTCACCCCAATAATTTGCAAAATTTGCAAGCTCCTCTTCAGCAATTTCTACCTCAAGAATGTGAGTATTTTCAGAAATGTGATGGTAATACAAATGTTTCTTCTACAATATCATCATCAAATTCTCTTCCAAAGCTTGTTTCGGTCTCGCAACATTCGCTAACAGGTAAGATGGATGAAGAAAATATGATAAATGAGAAAGATCATAGTTATAACATTTCTTCATCTAGCTTTGAAACATGGGGAGATTTTATGAATGAAGATGCAAATGATGATGCTTATTGGAAAGATTTTATAGAACAACATTCAAGCCAGCCATAG 912 0.3355 MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLNNLQQIILNAANIVTNCDINNVLRLQQYSQLPQCLINDVLGFNHNMQNFYDGSNIGFSSQIIHPNNLQNLQAPLQQFLPQECEYFQKCDGNTNVSSTISSSNSLPKLVSVSQHSLTGKMDEENMINEKDHSYNISSSSFETWGDFMNEDANDDAYWKDFIEQHSSQP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04121 303 CDD SANT 69 112 IPR001005 -
Vivi2g04121 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g04121 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Vivi2g04121 303 CDD SANT 16 61 IPR001005 -
Vivi2g04121 303 FunFam Transcription factor MYB39 69 130 - -
Vivi2g04121 303 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g04121 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g04121 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g04121 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g04121 303 Gene3D - 11 67 - -
Vivi2g04121 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g04121 303 FunFam MYB-related transcription factor 13 66 - -
Vivi2g04121 303 SMART sant 66 114 IPR001005 -
Vivi2g04121 303 SMART sant 13 63 IPR001005 -
Vivi2g04121 303 Gene3D - 69 116 - -
Vivi2g04121 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04121 Vivi-Chr2 154233971 154236020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04121 1 303 MYB Transcription Factor Family AT3G02940 47.385 2.48e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g04121 Myb_DNA-binding 6.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04121 K09422 - gmx:100808232 320.472