Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04069 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATTGCAACTCTGGCAATTGCATATCATGCATTTAACAGTAGAGGCCAATTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATTAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGTGTGTTTTGTGGCAGCTAACAAAGAAGATATTCTTGGGTTCGCTTCGAGAGGCGGAGGTTGAGAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAGATTCTTTTTGCGATTACTATTTTTAGGCAGGATTTTTCGGTTACGTTCCTTGCCATGGTTACGGCGTTGTTGTTGATTAAGGCTTTGCATTGGTTAGCTCAGAAGAGAGTGGAGTATATTGAGACTACTCCTACTGTGACTGTGTTGTCGCATGTTCGGATTGTGTCTTTTATGGGCTTCCTTCTTCTTTTGGATAGTGTTTTCTTATATAGTTCTTTGAAGCATTTGATAGAAACGTGGCAGGCTTCTGTTTCTCTGTTCTTTGCTTTCGAGTACATGATACTGGCAACAACAACAGTGTCGATTTTTGTAAAATATATTTTCTATGTCAGCGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACGTTTTACCTGGAACTTATTAAGGACTTGCTGCACTTGTCCATGTATCTGTGCTTCTTCTTTGTTATTTTTGTAAACTACGGTATTCCCTTGCACCTAATACGGGAGTTGTACGAGACGTTTAGGAACTTCAAAGTTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCCGAAGAGCTTGAAGCAAGTGATGCAACTTGTATTATCTGTCGTGAAGAGATGATTGCGGCTAAGAAACTGATATGTGGACACCTTTTTCATGTCCATTGCCTTCGATCATGGCTAGAGAGACAACATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCAGCCGAAAATGGAACAACTGCTGCTGGGGGTCAGCAAGGATCACAATCTAATGCTAATCGACAGGGTCAAACCGAGCTTGGCAGTGGGGGAGCAACTGATAGTGTGAGTCGCCATCAAGCTAGACTCCAAGCTGCCGCTGCTGCAGCTTCAATATATGAAAAGTCTTATGTTTACCCCCCTGCAACTTATTCTGTACGATCTCCTGGGTACACTACTTATCCCCCGGTTGCTGAATCTAGCAGTATTGATCTTAATGGAGAACAAGCTTCCAATGAGCAAGCACAACAGAAGTTTCATAACCCTGGTGGGCCAACAAATGTACCCTTTCCTCCGATGGGACAATCTCTTCCTTCCCAACCACATGCGGCGCCTTCCAATTATGGAGAGAGGATTGGAAATGATCGAAATTCCCGAAAAATTGAGTTTGAAGCTCATAAACAAATGTTTCAAGAACAGATTGAGATTCTGCAAGAACATATACAGAAACTGGAGACCACCTATGCTGAAGATGACGGCATGCCATCATCAGAAAGCAGAGGCAAGCTTAGCGTTTCCTCGGAGAGTCAAGAGGGAGAAGCATAA 1587 0.4304 MMRLKTYAGLSLIATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTVLSHVRIVSFMGFLLLLDSVFLYSSLKHLIETWQASVSLFFAFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIKDLLHLSMYLCFFFVIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELEASDATCIICREEMIAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTTAAGGQQGSQSNANRQGQTELGSGGATDSVSRHQARLQAAAAAASIYEKSYVYPPATYSVRSPGYTTYPPVAESSSIDLNGEQASNEQAQQKFHNPGGPTNVPFPPMGQSLPSQPHAAPSNYGERIGNDRNSRKIEFEAHKQMFQEQIEILQEHIQKLETTYAEDDGMPSSESRGKLSVSSESQEGEA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04069 528 MobiDBLite consensus disorder prediction 436 460 - -
Vivi2g04069 528 SUPERFAMILY RING/U-box 272 336 - -
Vivi2g04069 528 SMART ring_2 292 329 IPR001841 -
Vivi2g04069 528 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Vivi2g04069 528 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Vivi2g04069 528 MobiDBLite consensus disorder prediction 513 528 - -
Vivi2g04069 528 PANTHER RING ZINC FINGER PROTEIN 1 493 - -
Vivi2g04069 528 Coils Coil 481 501 - -
Vivi2g04069 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Vivi2g04069 528 MobiDBLite consensus disorder prediction 499 528 - -
Vivi2g04069 528 Pfam Ring finger domain 291 330 IPR001841 -
Vivi2g04069 528 CDD RING-H2_synoviolin 289 330 - -
Vivi2g04069 528 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04069 Vivi-Chr2 153636223 153640351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04069 1 516 C3H Transcription Factor Family AT3G16090 64.885 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04069 K10601 - gmx:100816441 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g04069 2 153636223 153640351 Vivi2g04069 2 153636223 153640351 ECH