Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04025 ATGGAAGAATCAAACATCATGCAACAAAACAACGTTCCTGCTTCTCCAAAACCGACAACAACATCTTACATAGGTGTTCGAAAGAGAAAATGGGGAAAATTCGTGTCAGAAATACGAGAGCCAGGTAAGAAAACCAGAATATGGTTAGGAAGCTATGAAGAGCCACAAATGGCAGCAGCAGCATATGATGTAGCAGCTTTTCATCTCAAAGGTCGATCCGCGAGGCTCAATTTTCCTGAGTTGGTTGAGAAGCTTCCAATGCCAGCAAGTTCTAAGGGTGAGGATATTCGTGTAGCAGCTCAACAAGCAGCATTGCAGTTCAAGAAGAGGCCAATATCAGAAGGGGGTGTCAATAGCAATAGCAATAGCAATGGCAATGGGAATGGAAATGGAAGTGTTGATGTTCCTGCAGTGAGGGTAGGGCTTTCACCTTCTCAAATTCAAGCTATCAATGAGTGTCCTATGGATTCACCAAACATGTGGATGCAAAGGACAGAAGCAGCACTCATGTTTGGATCATTGGAATTTGATGAATCTAGGAATTATGATGTTTTTGAGTTGAGTGATTGGGAAGAAATTCAGTATGAGTCATTGTGGGACTAG 603 0.4245 MEESNIMQQNNVPASPKPTTTSYIGVRKRKWGKFVSEIREPGKKTRIWLGSYEEPQMAAAAYDVAAFHLKGRSARLNFPELVEKLPMPASSKGEDIRVAAQQAALQFKKRPISEGGVNSNSNSNGNGNGNGSVDVPAVRVGLSPSQIQAINECPMDSPNMWMQRTEAALMFGSLEFDESRNYDVFELSDWEEIQYESLWD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04025 200 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g04025 200 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Vivi2g04025 200 MobiDBLite consensus disorder prediction 113 131 - -
Vivi2g04025 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 146 - -
Vivi2g04025 200 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 MobiDBLite consensus disorder prediction 109 133 - -
Vivi2g04025 200 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Vivi2g04025 200 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vivi2g04025 200 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04025 Vivi-Chr2 153069973 153070763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04025 21 200 AP2-EREBP Transcription Factor Family AT1G71450 48.333 4.23e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g04025 AP2 4.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04025 - - cam:101493379 246.128