Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04023 ATGTCTTCAACTGGTGCTGCTAGTTCTGCTTACAGAGGAGTCCGCAAGAGAAAATGGGGAAAATGGGTGTCCGAAATTCGCGAGCCAGGAACCAAAACAAGAATCTGGCTCGGAAGCTTCGAGACACCGGAGATGGCAGCAGCTGCCTACGACGTCGCTGCGTTGCATTTTCGAGGACGTGAGGCCAGACTCAACTTCCCTGAACTCGCAAACACTCTTCCTCATCCTTTAAGCAACAATGCTGATCACATTCGTATGGCAGCACATGAAGCGGCTTTGAGTCTCAGAGCTAACATGTTGACGCCATCAGATAACACCAGTAGAACTGACTCTGACTCGGGTGCAGGTTTAGTCAGTTCTACTGATAATATGGTGGCGCCAATGACAGTAAGACTCTCTCCGAGTCAAATTCAGGCTATCAATGATTCGCCGATGGATTCGCCTCCGACGTGGATGCAAATGTCACACCATTTCATGATGGATGATCAAAGCTACTTGTTTGGGAACAATGGATATGATTTTGAAGAGAATTATGAATGGGAGGATATGCAGCAGAGTGATTCTCTTTGGGATCCTTGA 579 0.475 MSSTGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELANTLPHPLSNNADHIRMAAHEAALSLRANMLTPSDNTSRTDSDSGAGLVSSTDNMVAPMTVRLSPSQIQAINDSPMDSPPTWMQMSHHFMMDDQSYLFGNNGYDFEENYEWEDMQQSDSLWDP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04023 192 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Vivi2g04023 192 CDD AP2 9 69 IPR001471 GO:0003700|GO:0006355
Vivi2g04023 192 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Vivi2g04023 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 148 - -
Vivi2g04023 192 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Vivi2g04023 192 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Vivi2g04023 192 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Vivi2g04023 192 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Vivi2g04023 192 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Vivi2g04023 192 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04023 Vivi-Chr2 152969817 152971356 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04023 9 192 AP2-EREBP Transcription Factor Family AT1G71450 58.152 2.17e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g04023 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04023 - - gmx:100801245 277.33