Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04021 ATGGGATTCTGGGGGATTGAAGTGAAACCTGGCAAACCGGTTCCTTATCATGCTGACAATGTGCAAGGAAAGCTTCATGTCACTCAGGCTACTTTAGGCAATGGTTCATCAACCGAGAAAAGCATTCTTCAGTGCTCTTCTGGACACAAAAGTTCAGTTTTTTTGTGTACGTTGCTACCAAATAAGGTTGAGTCGTGCCCTCTGAATCTTGAGTTTGATGATGAGGACTTGGTGGCATTCTCAGTCATCGGTTCACGGAGCATCCATCTTTCCGGTTATTTTGTAGCAGATGATGGCGACGACCTGAGGGATGACTATGAGTATGATTCAATGGGAGAGGACGTGGGAACTGATTCAGAGGAGTCATCTGAATATGATAGTGAAAATGGATATGATGAACACTTTTTTGACGATAGTGATATGGACACGTACACAGCTTCGCCAGTCCCAAATAGTGGAGTTGTGATTGAGGAAATACACGACGACATTGAGCCTGAAAATGGAGATAATTCAGCAAAGCAATTGAAGAAAAAGGAACAACCAGCTCTCTTGAAAGAGAAACCCAGCAAAAAAGAAAGTGAGCCAGATCTTGTTCTGGAAAGTGAAGATGAAGATGGTTTCCCAATTTCCACTTCAAAGCAAGCTAAATCTGAGTCTCAGAAAAGAGAAGCAGCGGCAAAAGAACAAACGGTCAAAAAAACCGGGAAGTCCAATAAGAAGGCAAAAGAAGCTGAACATTCTGCTGGCTTAAAGCGAAAAGGTGGAAGGGCTGATGAGGACGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAGAATAAGTCGAAAGATGAGGAAATTGCTCATGTACCCGAGACTAATGTTACTGTGGTAGATGAAAAGCATTCTGAAGGCGAGGAGATTAAAACTACAACTAATCAGAATGATGTTTCCCATGCAAAGGACGAACATGATGGAAAACTATCCAATGATGAAGTCCTTGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGAACAAAGAGACTGAAGGAGTAGCTTCTGGGAATGAAATCGCTACAACTGTTGAAAATCAGAAGTTGTCTACCTCTGAGGAAAAAGGGAAAGGTCAAGCTGAAGCCAAGCCATCTAACGTGAGAACATATGCAAATGGGTTGGTTATAGAGGACATATCTATGGGTAAACCAGATGGCAGAAGAGCCGAACTTGGAAAGAAGGTCAGTGTTAAATATATTGGCAAACTGAAAAAAGATGGGAAAATATTTGACTCATGTGTCGGAAAAGCATCTTTTAAATTTCGCCTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGAGTCAATGGGATGAGGATTGGTGACAAAAGAAGAATTACAATTCCACCATCTATGGGATACGGAGACAAGCGCGTTGGGGCAATACCACAAAATTCTTGGCTTGTATTTGATGTTGAGTTGGTTGGTGTTGGCGGCAACTAA 1479 0.4192 MGFWGIEVKPGKPVPYHADNVQGKLHVTQATLGNGSSTEKSILQCSSGHKSSVFLCTLLPNKVESCPLNLEFDDEDLVAFSVIGSRSIHLSGYFVADDGDDLRDDYEYDSMGEDVGTDSEESSEYDSENGYDEHFFDDSDMDTYTASPVPNSGVVIEEIHDDIEPENGDNSAKQLKKKEQPALLKEKPSKKESEPDLVLESEDEDGFPISTSKQAKSESQKREAAAKEQTVKKTGKSNKKAKEAEHSAGLKRKGGRADEDEQLQDGKKKKKNKSKDEEIAHVPETNVTVVDEKHSEGEEIKTTTNQNDVSHAKDEHDGKLSNDEVLVEKKNKKKKKKKNKETEGVASGNEIATTVENQKLSTSEEKGKGQAEAKPSNVRTYANGLVIEDISMGKPDGRRAELGKKVSVKYIGKLKKDGKIFDSCVGKASFKFRLGVGQVIKGWDVGVNGMRIGDKRRITIPPSMGYGDKRVGAIPQNSWLVFDVELVGVGGN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04021 492 PIRSF FK506-bp_FPR3 1 54 IPR023566 GO:0003755
Vivi2g04021 492 PIRSF FK506-bp_FPR3 246 490 IPR023566 GO:0003755
Vivi2g04021 492 PIRSF FK506-bp_FPR3 44 257 IPR023566 GO:0003755
Vivi2g04021 492 Gene3D Nucleoplasmin core domain 1 100 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 308 330 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 104 149 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 104 127 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 163 377 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 163 197 - -
Vivi2g04021 492 Gene3D - 347 491 IPR046357 GO:0003755
Vivi2g04021 492 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 403 490 IPR001179 GO:0003755
Vivi2g04021 492 SUPERFAMILY FKBP-like 366 489 - -
Vivi2g04021 492 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 491 - -
Vivi2g04021 492 FunFam Peptidyl-prolyl cis-trans isomerase 377 491 - -
Vivi2g04021 492 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 216 301 - -
Vivi2g04021 492 MobiDBLite consensus disorder prediction 346 360 - -
Vivi2g04021 492 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 399 487 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04021 Vivi-Chr2 152935085 152939435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04021 403 487 Calmodulin-binding Proteins AT3G25230 48.276 9.10e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04021 K14826 - gmx:100792856 630.557