Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g04000 ATGTTTTGCCTAAAAACTCCTTTGACTCTCAAAATCTTCAACCTATATAAACTCTCACCACTTCACCATCTTCTCAAACAATCCACTTCTTTGCCACCATTCACACTAGTTATAAACAATATCCATAAAGTTTTTTCTTCTTCAAAGATGAATTGGAGCACTTCAACAAGTGATGGTAATAGCAACAAGAAGTTTAAGGGAGTTAGACAAAGAAAATGGGGGAAATTTGTGTCGGAGATTCGTGTTCCGGGGACTCAAGAACGATTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCGGTTGCACATGATGTAGCTGTTTATTGTTTAAAGAGACCTTCTACTTTGGAGAAACTCAATTTTCCTGATATTTTGTCTTCCTATTGTATCCAAGAGAGAGATGGTTTGATGTCTCCGAGGACTGTTCAAAGGGTTGCTTCTGATGTTGCTATGGATGTTGATGCTAGAAACATTGCAAGCCAAACAACAACAATAACAAGAGCAACAACAACTTCGGATCAATCTCATCACGTGCATAATGTTGTTGCTGAGGATGATGTGTGTTGGTGGGAAGGTTTGGGTGGTGATGATCAAGGAATGATACAGGTTTCTAGCCAACAAGAAGGATTGAGCATTTCCATTGATGATTATCTATAA 660 0.3909 MFCLKTPLTLKIFNLYKLSPLHHLLKQSTSLPPFTLVINNIHKVFSSSKMNWSTSTSDGNSNKKFKGVRQRKWGKFVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLKRPSTLEKLNFPDILSSYCIQERDGLMSPRTVQRVASDVAMDVDARNIASQTTTITRATTTSDQSHHVHNVVAEDDVCWWEGLGGDDQGMIQVSSQQEGLSISIDDYL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g04000 219 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 ProSiteProfiles AP2/ERF domain profile. 64 123 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 53 175 - -
Vivi2g04000 219 CDD AP2 63 124 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 Gene3D AP2/ERF domain 63 124 IPR036955 GO:0003700|GO:0006355
Vivi2g04000 219 SMART rav1_2 64 129 IPR001471 GO:0003700|GO:0006355
Vivi2g04000 219 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g04000 Vivi-Chr2 152837961 152839005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g04000 50 199 AP2-EREBP Transcription Factor Family AT1G22810 43.333 3.38e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g04000 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g04000 - - vvo:131647099 437.958