Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03994 ATGGGGTGCATTTGCTCAAAATATTCTTCAAACAAAGAAAGATTTGAAGAATTTGGAAAAGCAAGTGAATGGAATAAATCTTCAGTGCAATTAGTTGCACCTACACAGATAAATGGGGTTGGCATTGCCTTTACAATGAATGGTGATGATTCTATGCCGCGTTTGACTAAGGCGTCATCACAAGTGTTTCAAAGAGTAGAAGAAAAAAACAATCACTTAAATGATAGTAACAAAAGCCAACATAAGATATGTAAGACAATAAGTTCTGCTATTGGTGAAAGAAAGCCAATAATGAGTAGAATACTCAGTGTGCAACATTTTTCAGGAGAACAATATGTTGATTCCGGATGGCCATTATGGTTGTCTTCAGTTGCAGCTGAGGCTATCAAAGGTTGGGTTCCTAGAAGGGCTGACACTTTTGAAAAATTAGACCAAATTGGACAGGGGGCTTATAGTAGTGTGCATAAAGCTATTGATCGTGAAACTGGTAAATATGTTGCATTGAAGAAAGTTAGGTTTTCAAGTGGAGATGTTGAAAGCGTTCGTTTTATGGCAAGGGAAATATATATTATGCGTCAACTTAACCATCCTAATATCCTCAAACTTGAAGGTCTTGTCACGTCTAGAACTTCAACTAGTTTGTATCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGATTAGCAGCTAGGCCCGGTATCAAGTTTACTGAACCACAGATAAAATGCTACATGAAGCAACTACTAAGTGGGCTAGAGCATTGTCATAGTAAGGGTGTGTTACACCGTGACATCAAGGGTTCTAATCTTCTAGTTGACAATAATGGAAATCTTAAGATTGGAGATTTTGGCCTAGCAACAGTTTATGAACCTAATAGCAAAGTGCCATTGACAAGTCGTGTTGTAACTCTTTGGTATAGAGCACCTGAACTTTTACTAGGTGCTACTGACTATGGTGTGGGAATTGACATGTGGAGTGTCGGTTGCATTCTTGCAGAATTGTTTGTGGGTAAGCCCATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCTCCATCTGAAGAATATTGGCAAAGAACAAAACTTCCATATGCAACAAGTTTTAAACCGCAAAACTCTTATGAACGACAAATTGCAAAAACGTTTAACAATTTTCCTTCCACTGCATTGGCTCTTGCTGATAGGCTCCTCTCAATGGAACCAGAACAACGCGGATCTGCAAAATCTGCACTTAATAGTGAGTTCTTCATTACAGATCCTCTACCTTGTGATCCTTCAAGCTTACCAAAGCTTCCTCCATGCAAAGAGTTTGATGTCAAGCGTCGCGATAAAGAATCAATAAGAAAAAATAATGAAGCTATTAAAGAACGTGGTCCGGGAAGTGTTTTAAGAGGAACGAGAAATACCAAAGCATTGAAAACACCAGACTATAATGGTCGGGGAGATATATCATTCCAGAGCAAATCAAATACTAGAATGTCAGGTCTTAAATATGAATCCCAAGAAGATGATGAATCTAATAACAAGTGTGAACCAAGTAGAGCATCCATGCATAATGGATATACAACTTTTATGCACAGCACAACAGGACCATCGTCGTTATGCAATAAGAGACAAGAACCATATAAAAAGTATATTTCCGAGTTAAGAACACAAAGGTCTCATGTGAATCAAGCAGCAATAGATTTCTCTATTTCTATTAAAAAGGAACAGGGTCGAGAATCTGGATTGCCTAAGAAAAATAGAATCCATTGTTCTGGACCATTGATGGCTACAGGTGGCAACATTGATGACATGCTTAGAGAGCATGAGCGGTTAATGCAAGATGTTTTTCGTAGTGTTAAGAAAGCCAATCCGTAA 1884 0.3827 MGCICSKYSSNKERFEEFGKASEWNKSSVQLVAPTQINGVGIAFTMNGDDSMPRLTKASSQVFQRVEEKNNHLNDSNKSQHKICKTISSAIGERKPIMSRILSVQHFSGEQYVDSGWPLWLSSVAAEAIKGWVPRRADTFEKLDQIGQGAYSSVHKAIDRETGKYVALKKVRFSSGDVESVRFMAREIYIMRQLNHPNILKLEGLVTSRTSTSLYLVFEYMEHDLAGLAARPGIKFTEPQIKCYMKQLLSGLEHCHSKGVLHRDIKGSNLLVDNNGNLKIGDFGLATVYEPNSKVPLTSRVVTLWYRAPELLLGATDYGVGIDMWSVGCILAELFVGKPIMPGRTEVEQMHKIFKLCGSPSEEYWQRTKLPYATSFKPQNSYERQIAKTFNNFPSTALALADRLLSMEPEQRGSAKSALNSEFFITDPLPCDPSSLPKLPPCKEFDVKRRDKESIRKNNEAIKERGPGSVLRGTRNTKALKTPDYNGRGDISFQSKSNTRMSGLKYESQEDDESNNKCEPSRASMHNGYTTFMHSTTGPSSLCNKRQEPYKKYISELRTQRSHVNQAAIDFSISIKKEQGRESGLPKKNRIHCSGPLMATGGNIDDMLREHERLMQDVFRSVKKANP 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03994 627 MobiDBLite consensus disorder prediction 479 520 - -
Vivi2g03994 627 FunFam probable serine/threonine-protein kinase At1g54610 223 464 - -
Vivi2g03994 627 SUPERFAMILY Protein kinase-like (PK-like) 133 432 IPR011009 -
Vivi2g03994 627 Gene3D Transferase(Phosphotransferase) domain 1 228 464 - -
Vivi2g03994 627 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03994 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vivi2g03994 627 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Vivi2g03994 627 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03994 627 Gene3D Phosphorylase Kinase; domain 1 135 227 - -
Vivi2g03994 627 FunFam probable serine/threonine-protein kinase At1g54610 127 222 - -
Vivi2g03994 627 PANTHER CELL DIVISION PROTEIN KINASE 138 430 - -
Vivi2g03994 627 MobiDBLite consensus disorder prediction 505 519 - -
Vivi2g03994 627 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03994 627 CDD STKc_CDK9_like 140 424 - -
Vivi2g03994 627 MobiDBLite consensus disorder prediction 488 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03994 Vivi-Chr2 152772018 152775276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03994 132 465 Core Cell Cycle Gene Families AT5G10270 51.714 2.76e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi2g03994 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03994 K08819 - gmx:100817858 840.491