Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03978 ATGTTACATGGAATGGAATCTATGTTTCAAGAAGAAGGGTCTTCATCTGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCACTTTCACCTGGTATAGGAGGAATAGGGTCTCCATATCCATGGCTGAGTAGAGAATTGAAATCTGAAGAAAGGGGTTTGTATTTGATTCATTTGTTACTCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCTTCTCCTGATGGAGACACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGATAGGATACTCAAAACTTGGCCTGGACTTCACCGAGCCTTGAATTCGACGAGAATTGTTATGCTTTCTGAAGAGATTCTTGTTCAGAAGTACTTTTTTGAGCTTTTCCCTTTCTTGAAAGTGGCGTATATTATGACTAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATCATTGATCTGAATGCTGCTGAGCCTGCACAATGGATTGCTCTTTTTCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACGGGGATTCATCAGCAGAAAGAGGTTTTGGATCAAATGGCTCATAAGCTATCTGAAGAAGCTGAAAAATTGGATATACCGTTCCAATTCAACCCTGTTGTTAGCAAGCTAGAAAATCTTGATTTCGACAAACTTCGTGTGAAAACTGGAGAAGCGCTTGCAATAAGTTCTATACTGCAATTACATTCTCTTTTGGCTTTGGATGATGAATCATCATCCTCAAGGAGAAAAACTCCTATTCTGTCAAGAAACTCAAATGGACTTCACCTTCAAAAAGTCATGCTTATGAACCAAAGCACATCATTAGGTGATTTACTTGAAAAAGATATGGTTAACGGCTATAGTCCAAGTCCCGATTCAGCATCGTCGTCGTCTTCGCCAGCATCTTCAACTGCTTCAATGAATGCAGAGAGCTTTCTCAACGCCTTGTGGAGTTTATCGCCGAAAGTCATGGTTGTAACCGAACAGGATTCAAATCACAACGGTTCAACTCTAATGGAGAGGCTGCTTGAAGCTCTATATTCTTATGCGGCATTGTTCGATTGTTTGGAATCAACTGTGTCAAGAACATCACTAGAGAGATTAAAGGTTGAGAAAATGCTGTTTGGTGAGGAAATCAAGAACATTATTGCTTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAGCTTGATAAGTGGTTTATGAGACTTGATTTGTGTGGTTTTGGTAATGTGCCTTTAAGCTATTATGGCATGTTACAAGCAAGAAGGTTTCTGCAGAGTTATGGCTGTGAGGGATACAGAATGAGAGAAGAAAATGGATGTGTTGTAATTTGTTGGCAAGATAGGTCATTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA 1464 0.3962 MLHGMESMFQEEGSSSVTCSPLQLFSMMSLSPGIGGIGSPYPWLSRELKSEERGLYLIHLLLTCANHVASGSLENANTTLEQISQLASPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIVMLSEEILVQKYFFELFPFLKVAYIMTNQAIVESMEGEKMVHIIDLNAAEPAQWIALFQVLSARPEGPPHLRITGIHQQKEVLDQMAHKLSEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSSRRKTPILSRNSNGLHLQKVMLMNQSTSLGDLLEKDMVNGYSPSPDSASSSSSPASSTASMNAESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDLCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVICWQDRSLFSTTAWRARK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03978 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 52 480 IPR005202 -
Vivi2g03978 487 Pfam GRAS domain family 57 484 IPR005202 -
Vivi2g03978 487 ProSiteProfiles GRAS family profile. 48 484 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03978 Vivi-Chr2 152449262 152451586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03978 5 487 GRAS Transcription Factor Family AT1G50420 67.617 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g03978 GRAS 4.5e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03978 - - cave:132164091 741.88