Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03961 ATGTCTACCTTGAAATTTTCTTTCATATTTTCCATATTTTTCTTTCTTTTTCACAGTTCATCTCAACTTTGTTTTAAGAAATATTGTGGAAAGCCTAACTCAGGTCTTCATTTTGAGTTCCCTTTCATATTAAGAGAAGATTATCAAAATAACAATAATCAAAGTGATCATCAAAGTGATCGATGTGGATACCCAGGGTTTGAAGTTTATTGTAACCATTCTAAGCAAGCTTTGCTTAAACTTCCAAATGATAGAAATTTTGTAGTCAAAAGTATTTCTCTTGAGAGACAAAGAATTTGGGTCAAAGGTCCCAATGATTGTCCACCACAAAGATTCATAGAAAACATAAACTTCAACGATGATTCACCTTTTATATGGGACAACTCTTTTCATAGTAATTATGAAAATGTAACATTTCTCAATTGTAGTACTAATTCTACAAAGGAACAAAATCCTGTGATTGATGAACTTCCAACTATACCTTGTATGAGCAATGCAAATTACTCGATTATGTATATGTTGCAATCATCTCTTGTTGAAAAGTTGAATTCGACGTGTCATAAGATTGGTTTTGCCGAGGTTCCAGTCAGAGATGATTCACAAGAACCAGTGGTTATCATGGATGGACTTTACTCTAATGCAATGTTGCGATGGAATACACCTTCATGTGGCTGCGAACCTGATCAATCCTGTGGCTTTTTAAATGATACGGGTCTTGATGTTACTTGTTATAGTAAGGTTATTAATTTCCCAGTTGGAATTCCTTCGACTCAGAGGCATAAAAAGTTCAACTTTTTTCCGGTACTTTGGGGAGTATTAGGAGTTTTGTTCTTCATATGGTGGGTATCTTTATCCATATGTAATGATAGACAACAAAACCATATTCAAGAAAGACAGACAATTACAAACATAGAACCAAGTAATCAAGAACCACCTTGGTTTGTGTTTGGGCTTGATAGATCAATGATAGAACAATATCCAAAGATTCAACTAGCAGAAAGTGGACAATTACCTAAGTCAATTGACAAACTTTGTTCCATATGTCTTTGTGAGTATAAGCCTATGGAGACATTAAGGAGTATACCACAATGCAATCATCATTTTCATGCTGATTGTATAGATGTTTGGCTCAAAATGAATGCTACGTGTCCTTTATGTCGAAATCTGCCAGGGTTATGA 1179 0.3444 MSTLKFSFIFSIFFFLFHSSSQLCFKKYCGKPNSGLHFEFPFILREDYQNNNNQSDHQSDRCGYPGFEVYCNHSKQALLKLPNDRNFVVKSISLERQRIWVKGPNDCPPQRFIENINFNDDSPFIWDNSFHSNYENVTFLNCSTNSTKEQNPVIDELPTIPCMSNANYSIMYMLQSSLVEKLNSTCHKIGFAEVPVRDDSQEPVVIMDGLYSNAMLRWNTPSCGCEPDQSCGFLNDTGLDVTCYSKVINFPVGIPSTQRHKKFNFFPVLWGVLGVLFFIWWVSLSICNDRQQNHIQERQTITNIEPSNQEPPWFVFGLDRSMIEQYPKIQLAESGQLPKSIDKLCSICLCEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPGL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03961 392 SMART ring_2 345 386 IPR001841 -
Vivi2g03961 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 390 IPR013083 -
Vivi2g03961 392 ProSiteProfiles Zinc finger RING-type profile. 345 387 IPR001841 -
Vivi2g03961 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 390 IPR046948 -
Vivi2g03961 392 SUPERFAMILY RING/U-box 344 388 - -
Vivi2g03961 392 CDD RING-H2_EL5-like 345 387 - -
Vivi2g03961 392 Pfam Wall-associated receptor kinase galacturonan-binding 26 102 IPR025287 GO:0030247
Vivi2g03961 392 Pfam Ring finger domain 345 387 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03961 Vivi-Chr2 152231557 152233472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03961 22 391 C3H Transcription Factor Family AT2G46495 30.319 1.27e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03961 - - psat:127123903 629.787