Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03960 ATGTCTACCTTGAAATTTTCTCTCATATCTTCCATATTCCTCTTTCTTTTTCACAGTTCAACTCAACTTTGTTTTAAACAATATTGTGGAAATCCTGAGTTAGGTCTTATTTTTGAGTTCCCTTTCATATTAAGAGAACGATTTGAATTTAACAATAATCAAAGTCATCGATGTGGATATCTAGGGTTTGAAGTTCATTGCAACGATGATAAGCAAGCTTTGCTTAAGCTCTCAAATGATAGAAATTTTGTAGTCAAAAGTATTTCTCTTGAGAGACAAAGAATTTGGGTCAACGGTCCCAATGATTGTCCACCACAAAGGTTCATTGAAAACATAAACGTTATTGAAGATTTACCTTTTCTATGGGACAACTCTTATCGTAAATATTATGAAAATGTTACATTTCTCAACTGTAGTACCGATTCTGGAAAGGAACCCAATCCAGTGATTGATGAGCTTCCAACTATACCTTGTATGAGCAATGCAAATTATTCGATTGTGTATACGTTGCAATCATCTATTGTTGATTCGTTGAGTTCAAGGTGTCATGAGATTGGATTTGCTAGGGTTCCAGTAAAAGATAATTCAAGTGACGCAATGGTAGTTTTGGATGGACTTTATTCTGATGCATTGTTGCGATGGGATACACCTTCTTGTGGATGTGAGCCTGATCAATTTTGTGGTTTTCTATCGGATACGGGTCTTAATGTTACTTGTTACCCTTCCGGCTACGTTCTTAATTTCCCAGGTGAAAATCCTTCAACACCAAAGCGTAAAAAAATTCACTTTTTTCCAGTAGTATGGGGAATATCAGGAATTTTGTTCTTCATATGGGTATCATTATCTATATATAAAGATAGAAGGCAAAACCGGATTCAGCAAAGACAAACAATTACAAATATAGAACCAAGTAATCGAGAACCACCTTGGTTTGTGTTTGGGCTTGATAGATCAAGGATAGAACAATATCCAAAAATTCAACTAGCAGAAAGTGGTCAATTACCTAAGTCAATTGACAATGTTTGTTCAATATGTCTTAGTGAGTATAAGCCTATGGATACCTTAAGGAGCATACCACAATGTAATCATCATTTTCATGTTGATTGTATAGATGTTTGGCTCAAGATGAATGCTACATGTCCTTTATGTCGAAATCTGCCAGGGTTATGA 1170 0.3521 MSTLKFSLISSIFLFLFHSSTQLCFKQYCGNPELGLIFEFPFILRERFEFNNNQSHRCGYLGFEVHCNDDKQALLKLSNDRNFVVKSISLERQRIWVNGPNDCPPQRFIENINVIEDLPFLWDNSYRKYYENVTFLNCSTDSGKEPNPVIDELPTIPCMSNANYSIVYTLQSSIVDSLSSRCHEIGFARVPVKDNSSDAMVVLDGLYSDALLRWDTPSCGCEPDQFCGFLSDTGLNVTCYPSGYVLNFPGENPSTPKRKKIHFFPVVWGISGILFFIWVSLSIYKDRRQNRIQQRQTITNIEPSNREPPWFVFGLDRSRIEQYPKIQLAESGQLPKSIDNVCSICLSEYKPMDTLRSIPQCNHHFHVDCIDVWLKMNATCPLCRNLPGL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03960 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 387 IPR013083 -
Vivi2g03960 389 SMART ring_2 342 383 IPR001841 -
Vivi2g03960 389 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 387 IPR046948 -
Vivi2g03960 389 CDD RING-H2_EL5-like 342 384 - -
Vivi2g03960 389 Pfam Wall-associated receptor kinase galacturonan-binding 26 98 IPR025287 GO:0030247
Vivi2g03960 389 Pfam Ring finger domain 341 384 IPR001841 -
Vivi2g03960 389 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Vivi2g03960 389 SUPERFAMILY RING/U-box 341 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03960 Vivi-Chr2 152223797 152226997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03960 19 388 C3H Transcription Factor Family AT2G46495 31.200 3.07e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03960 - - psat:127123903 635.565