Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03957 ATGGCAGCCCTAGGGCAAATGAACGTCATTGAATTGCCGGCAGCCCCACCAGTGAAACTAAACGTCATTGAATCGCTTTTGCGGGGATCCCGAAGCGTTGATTGCTTTGAAAAATTGGTGCAAATTGGCGAAGGAGCTTATGGTCAAGTTTACATGGCCCGAGAGATCCAAACTCGTGAAATCGTTGCTCTCAAGAAAATAAGAATGGACAATGAGAAAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTAAATCATGAAAATGTAATCAAATTGAAGGAAATCGTCACATCTCCAGGTCTTGAGAAAGATGATCAAGGGAGGCCAGATGGCAACAAATACAAAGGTGACATATATATGGTCTTCGAATATATGGACCATGATTTAAGGGGTCTTGCAGACCGGCCTGGCGTGAGGTTTACTGTCCCTCAAATTAAGTGTTACATGAGGCAGCTCTTGACAGGACTTCATTATTGTCATGTCAATCAAGTGCTTCACCGTGATATCAAAGGACCAAATCTTCTCATCGATAATGAAGGTAATCTGAAACTGGCAGATTTTGGATTGGCACGGTCATTTTCAAATGAGCATAATGCAAGCCTTACAAATCGAGTCATCACTTTATGGTACAGACCCCCCGAGTTACTATTGGGGACTACAAGGTATGGGCCAGCGGTAGACATGTGGTCCGTTGGGTGCATTTTCGCCGAGCTTCTTTATGGGAAGCCCATCTTTCCTGGAAAAGATGAGCCTGAGCAAGTAACTAGGATTTTTAGGCTTTGTGGAACCCCGGACGAGGTGAACTGGCCAGGAGTCCAGGAGACTCCTTGGTACAATCACTTTAAGCCGAAAAGAACGATGAAAAGGTGTCTGAGGGGTGCTTTCAGACATTTTGATCCTCATGCATTGGAGTTGTTGGACAAGATGCTCACACTCGATCCAGCTCAGAGAATTTCTGCGAAGGACGCACTTGATGCTGAGTACTTCTGGACTGATCCTTTACCATGTGATCCTAAGAGTTTACCCAAGTATGAGTCCTCACATGAGTTTCAGACCAAGAAAAAGCGTCAGCAACAATGGCAAAATGAAGAATACGCCAAGCGTCTTAAAATGCCTGCAGGACCCCATTGTGGTCCTTGTGGTGGAGGTGGAAGTGGCTATTCAGTTGGAGCTCGAAATTATCCTCAAGGTGGTCTTCATGGGTAG 1224 0.4469 MAALGQMNVIELPAAPPVKLNVIESLLRGSRSVDCFEKLVQIGEGAYGQVYMAREIQTREIVALKKIRMDNEKEGFPITAIREIKILKKLNHENVIKLKEIVTSPGLEKDDQGRPDGNKYKGDIYMVFEYMDHDLRGLADRPGVRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGPNLLIDNEGNLKLADFGLARSFSNEHNASLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLYGKPIFPGKDEPEQVTRIFRLCGTPDEVNWPGVQETPWYNHFKPKRTMKRCLRGAFRHFDPHALELLDKMLTLDPAQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQWQNEEYAKRLKMPAGPHCGPCGGGGSGYSVGARNYPQGGLHG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03957 407 FunFam Cyclin-dependent kinase C-2 133 375 - -
Vivi2g03957 407 Pfam Protein kinase domain 36 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03957 407 CDD STKc_CDK9_like 36 335 - -
Vivi2g03957 407 Gene3D Phosphorylase Kinase; domain 1 25 132 - -
Vivi2g03957 407 FunFam Cyclin-dependent kinase C-2 24 132 - -
Vivi2g03957 407 PANTHER CELL DIVISION PROTEIN KINASE 34 341 - -
Vivi2g03957 407 SMART serkin_6 36 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03957 407 Gene3D Transferase(Phosphotransferase) domain 1 133 374 - -
Vivi2g03957 407 SUPERFAMILY Protein kinase-like (PK-like) 31 343 IPR011009 -
Vivi2g03957 407 ProSiteProfiles Protein kinase domain profile. 36 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03957 407 ProSitePatterns Protein kinases ATP-binding region signature. 42 65 IPR017441 GO:0005524
Vivi2g03957 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03957 Vivi-Chr2 152132746 152136448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03957 1 406 Core Cell Cycle Gene Families AT5G10270 74.390 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi2g03957 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03957 K08819 - gmx:100793565 661.373