Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03954 ATGTCATATGTAACATCATATTCAGATTCTGCTACTAAAAACAATAACATATGTAGTAGTAGTAGTAATACGAGGAAGTTGTTTAATATGGATGATACTAATAATGTTGTAGCCGACATTGATATTAATAAAACTAAACAAATTGAACGGCGTTACGAAGAATATAGAAGGAAGAGAAAGCGTCCTTGTAAAGCGCCGGTGATCCCTACGATGGAATCAACTACCGGAGACACGGCCACGGCGTCACACGGTTTTATATCGGTGATTGGACGGAGGAGAGTGATGGAAGACGCTATCAAGGTGATTCCACGTTTTATGGCGGCGGAAAAGCAACCGTGTGGATATGATTTCTTTGCGGTTTATGATGGACACGGTGGGATGACAGTGGCGAATGCTTGTCGCGATAGGTTGCACTTGTTGTTGGCGGAGGAAGTGAAGGAGGGTGGAGATCAAGGATTGGATTGGTGTAAAGCTATGTGCTCTTGTTTCATGAAGATGGATCGTGAAATTGGAGTCAGTGGTGGTGGTAATGGTGACGTTGATGCGAATAACGTGGGTTCTACGGCGGCTGTTGTGGTGGTGGGGAAAGAGGAGATCATTGTGGCGAACTGTGGTGATTCAAGGGCGATTTTGTGTAGTGGCGGTGTAGCAGTTGCACTTTCACGTGATCATAAGCCAGATCTTCCAGATGAAAGAGAGAGGATTGAAGCAGCTGGTGGAAGAGTGATTAATTGGAACGGGAGTCGCGTTCTAGGAATTCTTGCTACTTCTAGATCCATAGGGGATCATTGCATGAAGCCATTTGTGATATCTCAACCAGAGATCAACGTGCATGGAAGAACAAAATCAGATGAGTTTGTTGTGGTGGCAAGTGATGGACTTTGGGATGTGGTATCAAACAGTTTTGTTTGTGAAGTGGTTAAAAGCTGTCTCCAAGGTCATATGAGGAGGAATAATAGTGATAATGTAAGAGAGGATCTCAGTATTAAAGGTTATGCAGCTGAGGCTGCTGCAATTCTAGCTGAATTGGCTATGGCTAAGGGAAGCAAAGACAACATCAGTGTTATAGTCATCCAACTCAACAACACTAACATTTGA 1098 0.4353 MSYVTSYSDSATKNNNICSSSSNTRKLFNMDDTNNVVADIDINKTKQIERRYEEYRRKRKRPCKAPVIPTMESTTGDTATASHGFISVIGRRRVMEDAIKVIPRFMAAEKQPCGYDFFAVYDGHGGMTVANACRDRLHLLLAEEVKEGGDQGLDWCKAMCSCFMKMDREIGVSGGGNGDVDANNVGSTAAVVVVGKEEIIVANCGDSRAILCSGGVAVALSRDHKPDLPDERERIEAAGGRVINWNGSRVLGILATSRSIGDHCMKPFVISQPEINVHGRTKSDEFVVVASDGLWDVVSNSFVCEVVKSCLQGHMRRNNSDNVREDLSIKGYAAEAAAILAELAMAKGSKDNISVIVIQLNNTNI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03954 365 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Vivi2g03954 365 FunFam Protein phosphatase 2C 51 75 365 - -
Vivi2g03954 365 Pfam Protein phosphatase 2C 83 353 IPR001932 -
Vivi2g03954 365 CDD PP2Cc 82 360 IPR001932 -
Vivi2g03954 365 ProSiteProfiles PPM-type phosphatase domain profile. 82 360 IPR001932 -
Vivi2g03954 365 SUPERFAMILY PP2C-like 77 362 IPR036457 -
Vivi2g03954 365 Gene3D - 77 364 IPR036457 -
Vivi2g03954 365 SMART PP2C_4 72 358 IPR001932 -
Vivi2g03954 365 PANTHER PROTEIN PHOSPHATASE 56 359 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03954 Vivi-Chr2 152067023 152068505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03954 77 360 PP2C-type Phosphatase Gene Family AT2G29380 46.284 4.04e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03954 K14497 - gmx:100813248 439.884