Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03953 ATGGACACAAGAATGCAAAACACAAACACACCGTTCCAAAACAGTTCCGATATTGGATCATGTTTATCAAATCTCATCTTATCAACTACCACAAACACACTTGACTCTATTTTCTCCGATATTCCATCAACAAACACCACAAACAACAACAACAACAACAACAATAACTTTTTCGGTTCTTCGAATCATGAACCTTTAGGCTCCTCTGTTTATCTTCGTCAAAGAGACATTCTTCAAAAATTCTACGAAGAAACTCGATTAACCCCCTCTTTCATTCCATCTTCATTTTCAAACTCCCCTTTATACACCACAACAGCAAATTCAATTTTAAGTGCTACCGCGAGTTCGAGTTTGTTCACTTCCTTGGTGAACAACCCTTTGAAGAAGAAACTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTTGCGGAGATTCGACTTCCTCAGAACAGAATGAGAGTTTGGCTTGGAACCTACGAAACCGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCCTATAAGCTTCGAGGCGAATACGCACGTTTGAATTTCCCGAATTTGAAGGATCCAACGAAGTTAGGCTTCGGAGATTCTACAAAATTGAATGCTTTGAAGAGTTCCGTGGATGCGAAGATTCAAGCTATTTGTCAGAAGGTGAAAAGAGAAAAAGCTAAGAAGATTGCAGCAAAGAAGATGAAGAAGGAGAGTGATGAAAATGAGAAGAGGAAGAAGAAGAACGAGGAGTTAGAGAAAATTAACTCGTCTTCGTGTTCTTCTTCTTCGTCATCGTTACCGTTATCGCCTTCTATTTTCTACCAAGATTGGGTGAATGAGTTCTTTTCGCCTACTGTTTCTGATGACGGAGTTTGGAAGGGGGAGAGTTCGAATTCGCCGAATTCGGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGTTCATTGGCAAGAATGCCATCTTTTGATCCTGAGTTGATTTGGGAAATTCTTGCTATATAG 1011 0.4055 MDTRMQNTNTPFQNSSDIGSCLSNLILSTTTNTLDSIFSDIPSTNTTNNNNNNNNNFFGSSNHEPLGSSVYLRQRDILQKFYEETRLTPSFIPSSFSNSPLYTTTANSILSATASSSLFTSLVNNPLKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKSSVDAKIQAICQKVKREKAKKIAAKKMKKESDENEKRKKKNEELEKINSSSCSSSSSSLPLSPSIFYQDWVNEFFSPTVSDDGVWKGESSNSPNSVSTMVTEETEFEDCSLARMPSFDPELIWEILAI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03953 336 Coils Coil 230 255 - -
Vivi2g03953 336 SMART rav1_2 131 194 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 PRINTS Ethylene responsive element binding protein signature 154 170 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 Gene3D AP2/ERF domain 131 189 IPR036955 GO:0003700|GO:0006355
Vivi2g03953 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 334 - -
Vivi2g03953 336 MobiDBLite consensus disorder prediction 230 268 - -
Vivi2g03953 336 MobiDBLite consensus disorder prediction 232 254 - -
Vivi2g03953 336 ProSiteProfiles AP2/ERF domain profile. 131 188 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 CDD AP2 130 190 IPR001471 GO:0003700|GO:0006355
Vivi2g03953 336 FunFam Ethylene-responsive transcription factor 2 130 189 - -
Vivi2g03953 336 SUPERFAMILY DNA-binding domain 131 188 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03953 Vivi-Chr2 151964944 151966329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03953 5 335 AP2-EREBP Transcription Factor Family AT1G64380 45.429 1.36e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03953 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03953 - - vvo:131647084 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03953 2 151964944 151966329 Vivi2g03953 2 151964944 151966329 ECH