Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03952 ATGAGTATTGAAGAGCGTCCCCAAAATAAGGCAAAGATCTACCCAACCACAAGTGCAACCTCTCAAGAAGTGAGCAGCACTGAATGGGGTTTCATAGAGATGAGTGAACAAGAGGTGGATCTCATATGCAGAATGCACGACTTAGTTGGAGATAGATGGAATTTGATAGCAGGTCGCATTCCGGGTCGTAAAGCCGAAGAAATTGAGAGATTCTGGATTATGAGACATGCTGATCATGCCAACAGAAATCATCAACATATAGAAAAATAA 270 0.4185 MSIEERPQNKAKIYPTTSATSQEVSSTEWGFIEMSEQEVDLICRMHDLVGDRWNLIAGRIPGRKAEEIERFWIMRHADHANRNHQHIEK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03952 89 SUPERFAMILY Homeodomain-like 35 85 IPR009057 -
Vivi2g03952 89 SMART sant 30 78 IPR001005 -
Vivi2g03952 89 Gene3D - 34 89 - -
Vivi2g03952 89 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 33 76 - -
Vivi2g03952 89 Pfam Myb-like DNA-binding domain 35 73 IPR001005 -
Vivi2g03952 89 CDD SANT 33 72 IPR001005 -
Vivi2g03952 89 FunFam MYB-like transcription factor 33 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03952 Vivi-Chr2 151938054 151938732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03952 34 72 MYB Transcription Factor Family AT5G52600 61.538 1.23e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi2g03952 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03952 K09422 - twl:119981384 111.309