Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03942 ATGACTCTATCACCAACAAAGAAACACACTCACCGCATCAACCTCACCAAAGAAAACACTCCCGAAAATCCATTTCCCAAAATAGTCACAATAACCTACACAGACAAAGACGCTACTGACTCCTCCAGCGACGAAGAAGAATCTTCAAAACGTAACCGAACTAAAAAGTTTGTCAACGAGATTATCATAGAGCCATGCGGTGGCCGTGGTAACACCGGCCACGGCGGTGTTGTTCCGAGGAAGAGAAACAGAACTACCACCGGTGGAAAAACAAGAGCTCCGGCGACTCGGCAAGTCACCTCCGGGCAGAAATACAGAGGAGTTAGGCAGAGGCCATGGGGAAAATGGGCGGCAGAGATAAGAGACCCGTCGCGTGGCGTGCGCGTGTGGCTTGGCACGTTTCAAACTGCTGAAGAAGCTGCTTTAGTGTACGACAACGCGGCTATTAAGCTGCGTGGTCCCGACGCGCTAACTAATTTTATAACTCCACCCGCCACGTGTCAAGTACTATCTCCCGAAATTGAAATTACTCCTCAGTTACCGTTACCGGTGAGTGACGGTTACATCTCCGGCGACGAATCTCAATCTCAAACACAAACTCAGAACGGTAAGAGTTTGTTTTCTCCTACTTCAGTTCTACAGTGTTGTTCATCTTCCGAAGAAGTAGCTGAATCCGTTTCCGTTACAAACGATAAAGAATCTGAATCACTGTTTTCGATTCCATCTGATATACTATTTGATTTCCAAGGCTCTTCACCGACGAACGATGAGTTTAACAGCTTCAACACCTTGCCGGAGAACATGTTCTACGGCGATATCGATTGTTCGGAGTATTTCAATTTCGATTTCGCTTTAGAAAGCTTGCATACGCCTAAGGATGAAGATTTTTTCCAAGATATTGATGATTTATTTGCTTCTGATGCTCTTCTTGCTCTTTAA 939 0.4569 MTLSPTKKHTHRINLTKENTPENPFPKIVTITYTDKDATDSSSDEEESSKRNRTKKFVNEIIIEPCGGRGNTGHGGVVPRKRNRTTTGGKTRAPATRQVTSGQKYRGVRQRPWGKWAAEIRDPSRGVRVWLGTFQTAEEAALVYDNAAIKLRGPDALTNFITPPATCQVLSPEIEITPQLPLPVSDGYISGDESQSQTQTQNGKSLFSPTSVLQCCSSSEEVAESVSVTNDKESESLFSIPSDILFDFQGSSPTNDEFNSFNTLPENMFYGDIDCSEYFNFDFALESLHTPKDEDFFQDIDDLFASDALLAL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03942 312 MobiDBLite consensus disorder prediction 43 58 - -
Vivi2g03942 312 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Vivi2g03942 312 SUPERFAMILY DNA-binding domain 104 160 IPR016177 GO:0003677
Vivi2g03942 312 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Vivi2g03942 312 MobiDBLite consensus disorder prediction 1 110 - -
Vivi2g03942 312 MobiDBLite consensus disorder prediction 185 206 - -
Vivi2g03942 312 MobiDBLite consensus disorder prediction 189 206 - -
Vivi2g03942 312 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Vivi2g03942 312 FunFam Ethylene-responsive transcription factor 2 103 162 - -
Vivi2g03942 312 MobiDBLite consensus disorder prediction 88 105 - -
Vivi2g03942 312 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Vivi2g03942 312 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Vivi2g03942 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 238 - -
Vivi2g03942 312 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Vivi2g03942 312 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03942 Vivi-Chr2 151727479 151729275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03942 1 312 AP2-EREBP Transcription Factor Family AT4G23750 40.058 1.73e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g03942 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03942 - - mtr:11438409 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03942 2 151727479 151729275 Vivi2g03942 2 151727479 151729275 ECH
Vivi2g03942 2 151727479 151729275 Vivi5g06027 5 165170924 165171960 PCT