Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03907 ATGGGTCATCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATTAGATACATTACTACTCATGGATATGGATGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGATGTGGTAAGAGTTGTCGATTGCGATGGATAAATTATTTGAGGCCTGATATTAGAAGAGGAAGATTTACACCTGAGGAAGAGAAGTTAATTATAAGTCTTCATGGAGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACAGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAGAAGAAAATTAGAAAATCTTCTTCATCTTCTTCTGCTCCTAATTTATCATTTAATACACCACAAACCATTGATCATCATCCTCAGTACAATTACAGTTCCAATCAACTGGAGAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTGTTTTCTTCAACATGTCCTTTATTTATGTTTGACACAACAACAGCAACAACAACAACAGATCATACAAATGTAATAAGACCAGAAGTGTTCTTCCATGATAACATGAGTTTGAGCTCAGAAACATGGAACTTGAATCATCATCATAACCATCATCAAGTTCAGGCACTTCCTCCTCCTCCTCATCCAGCAGCAACAGCTTTTACAACCATTCATGATACTACTAGTAGTAATTATAATCTGCCACCATTGATAGATAATAATGTGGAAAACATGGTTCCAATTGATCAAGTGCAGTCTTGCAACATGGATGAGGAAGGAGAGATATTAACATTGGAGTCATTACAGTTGCAGAGACATGAGCTGAATGAATGGGTGGAAAATCAACAGCAACAACAATGTTCTAGCTTTCTTTTCTGGGAGAGTGTTGAAGAACCAAACTCATCAAATATTATGGGAACAAGTGCAACAAATTCACTTTCTCCTTTTCCTTCTTCATTATTATGA 999 0.3694 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSSSAPNLSFNTPQTIDHHPQYNYSSNQLENYFTNQENVTTKETLFSSTCPLFMFDTTTATTTTDHTNVIRPEVFFHDNMSLSSETWNLNHHHNHHQVQALPPPPHPAATAFTTIHDTTSSNYNLPPLIDNNVENMVPIDQVQSCNMDEEGEILTLESLQLQRHELNEWVENQQQQQCSSFLFWESVEEPNSSNIMGTSATNSLSPFPSSLL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03907 332 FunFam Transcription factor MYB26 68 141 - -
Vivi2g03907 332 Gene3D - 6 66 - -
Vivi2g03907 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g03907 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g03907 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi2g03907 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g03907 332 CDD SANT 17 61 IPR001005 -
Vivi2g03907 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g03907 332 SMART sant 66 114 IPR001005 -
Vivi2g03907 332 SMART sant 13 63 IPR001005 -
Vivi2g03907 332 MobiDBLite consensus disorder prediction 313 332 - -
Vivi2g03907 332 Coils Coil 276 296 - -
Vivi2g03907 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g03907 332 PANTHER MYB DOMAIN PROTEIN 55 1 300 - -
Vivi2g03907 332 CDD SANT 69 111 IPR001005 -
Vivi2g03907 332 MobiDBLite consensus disorder prediction 120 141 - -
Vivi2g03907 332 Gene3D - 69 135 - -
Vivi2g03907 332 FunFam MYB transcription factor 6 66 - -
Vivi2g03907 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03907 Vivi-Chr2 151138178 151140164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03907 1 326 MYB Transcription Factor Family AT1G63910 49.319 9.46e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g03907 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03907 K09422 K02947 gmx:100797787 405.216