Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03892 ATGGGGTTTCCAACAGACGTTATGTTGCCAACGGTTTTTATGCAGTTTCTTTCAGTATTAGCTTCCATCAGAAAACTCCTTACTCTCTTTTTCTGTTATTTCGGTTTCGAATCCGACTTTTCCTTTCCTGAAACTTCACCTGAACCCCGGCTGCTCATCAGAGAAATCCTTCCGGCGGTGAAATTCTCGGAGCTGGAGCTAGCGGTTGTGGAATGCTCACAGGATGGCTGTGCCGTCTGCCTTTACGAGTTCAAGGCGGAAGACGAGATCCAACGGCTCACAAACTGCCGTCACATCTTCCATAAAAACTGCCTCGACCGTTGGATGGGATACTATCATACGACATGTCCTTTGTGCCGCACAACTTTCCTACCTCATCACATGCAAGATACATGA 396 0.4722 MGFPTDVMLPTVFMQFLSVLASIRKLLTLFFCYFGFESDFSFPETSPEPRLLIREILPAVKFSELELAVVECSQDGCAVCLYEFKAEDEIQRLTNCRHIFHKNCLDRWMGYYHTTCPLCRTTFLPHHMQDT 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03892 131 SUPERFAMILY RING/U-box 71 126 - -
Vivi2g03892 131 ProSiteProfiles Zinc finger RING-type profile. 77 120 IPR001841 -
Vivi2g03892 131 Pfam Ring finger domain 77 120 IPR001841 -
Vivi2g03892 131 PANTHER RING ZINC FINGER PROTEIN-RELATED 19 126 - -
Vivi2g03892 131 SMART ring_2 77 119 IPR001841 -
Vivi2g03892 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 125 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03892 Vivi-Chr2 150891707 150892102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03892 1 129 C3H Transcription Factor Family AT1G63840 47.619 2.42e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03892 K16281 - gmx:102665617 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03892 2 150891707 150892102 Vivi2g03892 2 150891707 150892102 ECH
Vivi2g03892 2 150891707 150892102 Vivi5g05949 5 163730821 163731655 PCT