Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03891 ATGTCTTCTGATATCTATACTTTCGATATTTCTCATCACACACATTCAACTCCAAACATATTCTCCTATGATCCTTACTACCCTTTCGATTTCATTGATGCAGTTCAAGAGGATTTCAACAATTCTTTAGACCCTTTTTTCTTTTCTTCCCCAACCACCAACCATGCGCTACCACTAACAAATGGTTTAAATACAAACACTGAGCTTGAAGATTATCATAATAACACAGTCATGGATTCCGCAAATTTTCAGTGGCATGAATTGAACTCCTCCGAAAATAGTTTCTTCACTGGACAAATAAGAAGGGCAAGCAGTACATGCGATTCTCAAACGGAGGAAGCGAAGTTGTTGAAGGTAGGGCGTTACAGTTTAGAAGAAAGAAAACAAAAAATCTCTAAATACAGAGCCAAGAGAAAACAGAGGAAGTTCAACAAAATTATTAAGTATGAATGTCGAAAGACACTGGCCGACAGTAGAACACGCATACGTGGCAGATTCGCACGTAACGATGAAACCAGTGAGATTCCAAAAACTCCATGTTCAAAAACAGCAGAAAGGCATTGTTCTGAAGATGAGTTATGGGTTGATCTGATTGAAGGATTAAATGAAGATCTCACATCATGTTTTTATTTGAGCTGA 639 0.3772 MSSDIYTFDISHHTHSTPNIFSYDPYYPFDFIDAVQEDFNNSLDPFFFSSPTTNHALPLTNGLNTNTELEDYHNNTVMDSANFQWHELNSSENSFFTGQIRRASSTCDSQTEEAKLLKVGRYSLEERKQKISKYRAKRKQRKFNKIIKYECRKTLADSRTRIRGRFARNDETSEIPKTPCSKTAERHCSEDELWVDLIEGLNEDLTSCFYLS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03891 212 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 78 175 IPR045281 GO:0009909
Vivi2g03891 212 ProSiteProfiles CCT domain profile. 127 169 IPR010402 GO:0005515
Vivi2g03891 212 Pfam CCT motif 127 169 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03891 Vivi-Chr2 150881370 150882414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03891 103 174 C2C2-CO-like Transcription Factor Family AT5G24930 43.056 8.48e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g03891 CCT 2.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03891 - - vvo:131637649 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03891 2 150881370 150882414 Vivi2g03891 2 150881370 150882414 ECH
Vivi2g03891 2 150881370 150882414 Vivi5g05945 5 163693422 163695211 PCT