Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03884 ATGGCGAAACTATTATCCCTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTCTCCGCTCGATCTCACTATCCTTCCATGCCTTCCTATCCCAAAGGAGATCCCGGTACCAGCAGTACCTCCGCTGCCGCCGTCACGGAAGCTTCCAACGTCACCGGACTTTTCTCCGTTAACGGCATGACTTGCTCCGCTTGCGCCGGATCCGTCGAGAAATCCATCAAACGGCTCCATGGAATTCAGGAAGCTGTTGTTGATGTCCTCAACAACCGTGCTCGCGTCATCTTTCATCCCTCGTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCAGCGTTACTAGGGGACGTGACGAATGATATTTCAATTCAAATATGCCGTATACAAATCAAAGGAATGACATGCACGTCATGCTCTACAGCCGTTGAATCAGCGCTGATCGCTCTCTCTGGAGTAGTTGAAGCTCGAGTAGCTTTAGCAACTGAAGAAGCCAATGTTCATTACAATCCAAATATTGTTACCTATAGCCAAATCTTGGAAGCAGTTGATGATGCTGGATTTGCAGCCGTTCTTATCAGTTCAAGTGAAGATTTAAGCAAAATAGATCTTCAAGTGGAAGGTGATCTCGCCGATCATTCCATGATTACGCTTATTGAAGATTCTCTTCGATCACTCCCTGGGGTTTTAGAATTACGCACGAGTCTCGAATTAAGTAAAATTTCACTTTCTTATAAACCGGATTTAACAGGACCAAGAGACTTCATCAATGTGATTCAAGAAACTAGTAATGGAAATTTGAAGGCGAAGATATTTCCAGGTGAAGGAGGGAGAAGAGATGCTCATAGAAACAAGGAAATAAAAAGTTATTATAAATCCTTTTTATGGAGTTTGGTATTTACTGTTCCGGTTTTTCTTACTTCCATGGTGTTTATGTATATACCTGGAATAAAGGATTTATTGGATAGCAAAGTTGTGAAGATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCAGTGCAGTTCATATTCGGGTGGAGATTTTACGTTGGTTCTTATAAATCATTGCGCCGTGGCTCTGCTAATATGGATGTTCTTATTGCTCTTGGAACAAATGCGGCTTATTTCTATTCTGTTTACTCCGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTCTTTGAGACTAGTGCAATGCTTATTTCGTTTATTCTCTTAGGAAAATATCTTGAGATTTTAGCTAAAGGGAAAACATCGAACGCGATTGCTAAGCTCTTGAATTTGACACCTGATACTGCTATATTGTTAAGTTTGGATGGTGAAGGGAATGTTGTTGGGGAGGAAGAAATTGATAGTAGGTTGGTTCAGAAGAATGATGCGATTAAAATTATTCCGGGTGCAAAAGTAGCATCGGATGGTTTGGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCACGTCCTGTGTCTAAGAGGAAAGGTGATACTGTTATTGGTGGAACATTGAATGAGAATGGAGTTTTGCATGTTAAGGCAACAAAAGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTCGACTTGTTGAGTCTGCACAAATGGCCAAAGCTCCCGTGCAGAAGTTTGCTGATCGCATTTCCACATACTTTGTGCCTTTGGTGATTTTGATCTCATTTTCAACCTGGCTTGCCTGGTTTTTAGCTGGAAAATATCATGCTTACCCGAAATCCTGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTGATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCTACGGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGAGTTTTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAGCCTGTGATAGTAAATACGAAACTATTGATAAAAATGGTACTCCGGGAGTTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAGCATCCTCTAGCTAAGGCTGTTGTTGAGTATGCCAAAAAATTTAAAGATGAGGAGAACCCTTCTTGGCCAGAAGCACGTGATTTTGTTTCCATTACTGGACATGGTGTAAAGGCCACCGTTCGTAACAAGGAAATAATGGTGGGTAATAAGAGCTTGTTCACTGACCACAATATTGCAATTCCCGCTGTTGCTGAAGATCTACTCGCTGAAGCAGAAAATTTGGCTCAAACAGGAATTGTAGTATCTATAAATGGGGAAATAGCTGGGGTTTTAGCAGTATCTGATCCATTGAAATCAGACGCTCAAGAAGTTATTTCTATTCTCAAGTCTATGAAAATTAAGAGCATCATGGTGACTGGGGACAACTGGGGAACTGCTAATTCCATTGCCAGGGAAGTTGGGATTGAAGATGTTATTGCTGAGGCGAAACCGGATCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGATACACAGTGGCTATGGTAGGGGACGGCATCAACGATTCACCTGCACTTGTAGCAGCAGATGTTGGAATGGCAATAGGCGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTCCTAATGAAGAGCAACTTAGAGGATGTCATTACTGCCATTGACCTTTCCAGAAAGACATTTTCCCGTATACGCCTTAATTATATTTGGGCTTTGGGCTATAATGTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGATTGCCACCTTGGATTGCTGGAGCTGCTATGGCTGCTTCTTCTGTTAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGGCCCAAGAAGCTGAACAGCCTTGACATAGGAGCCATAACAATCGAGACATCAAGTGATCCTTTGATCATACACGATGATTGA 3006 0.4255 MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKGDPGTSSTSAAAVTEASNVTGLFSVNGMTCSACAGSVEKSIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLGDVTNDISIQICRIQIKGMTCTSCSTAVESALIALSGVVEARVALATEEANVHYNPNIVTYSQILEAVDDAGFAAVLISSSEDLSKIDLQVEGDLADHSMITLIEDSLRSLPGVLELRTSLELSKISLSYKPDLTGPRDFINVIQETSNGNLKAKIFPGEGGRRDAHRNKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKDLLDSKVVKMLTIGEVIRWVLATPVQFIFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLLNLTPDTAILLSLDGEGNVVGEEEIDSRLVQKNDAIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISTYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLIKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNKEIMVGNKSLFTDHNIAIPAVAEDLLAEAENLAQTGIVVSINGEIAGVLAVSDPLKSDAQEVISILKSMKIKSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGAITIETSSDPLIIHDD 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03884 1001 Pfam Heavy-metal-associated domain 133 192 IPR006121 GO:0046872
Vivi2g03884 1001 Pfam Heavy-metal-associated domain 55 115 IPR006121 GO:0046872
Vivi2g03884 1001 SFLD Haloacid Dehalogenase 639 913 - -
Vivi2g03884 1001 FunFam Copper-transporting ATPase HMA5 128 199 - -
Vivi2g03884 1001 FunFam Copper-transporting ATPase HMA5 51 120 - -
Vivi2g03884 1001 Gene3D - 624 918 IPR023214 -
Vivi2g03884 1001 NCBIfam HAD-IC family P-type ATPase 410 945 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g03884 1001 SUPERFAMILY HMA, heavy metal-associated domain 129 200 IPR036163 GO:0046872
Vivi2g03884 1001 SUPERFAMILY HAD-like 656 967 IPR036412 -
Vivi2g03884 1001 FunFam Copper-transporting ATPase 1, putative 425 547 - -
Vivi2g03884 1001 ProSiteProfiles Heavy-metal-associated domain profile. 204 271 IPR006121 GO:0046872
Vivi2g03884 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 659 665 IPR018303 -
Vivi2g03884 1001 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Vivi2g03884 1001 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Vivi2g03884 1001 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Vivi2g03884 1001 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Vivi2g03884 1001 NCBIfam copper ion binding protein 133 193 IPR006122 GO:0005507
Vivi2g03884 1001 NCBIfam copper ion binding protein 55 116 IPR006122 GO:0005507
Vivi2g03884 1001 CDD HMA 55 117 IPR006121 GO:0046872
Vivi2g03884 1001 CDD P-type_ATPase_Cu-like 296 971 - -
Vivi2g03884 1001 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Vivi2g03884 1001 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 984 - -
Vivi2g03884 1001 NCBIfam heavy metal translocating P-type ATPase 370 970 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi2g03884 1001 Gene3D - 664 742 IPR023299 GO:0000166
Vivi2g03884 1001 Gene3D - 743 792 IPR023299 GO:0000166
Vivi2g03884 1001 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Vivi2g03884 1001 SUPERFAMILY Calcium ATPase, transduction domain A 457 543 IPR008250 -
Vivi2g03884 1001 FunFam Probable copper-transporting ATPase HMA5 759 918 - -
Vivi2g03884 1001 Gene3D - 425 547 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 884 896 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 657 671 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 808 818 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 786 797 - -
Vivi2g03884 1001 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Vivi2g03884 1001 CDD HMA 133 194 IPR006121 GO:0046872
Vivi2g03884 1001 Gene3D - 129 201 - -
Vivi2g03884 1001 Pfam E1-E2 ATPase 456 635 - -
Vivi2g03884 1001 Pfam haloacid dehalogenase-like hydrolase 653 875 - -
Vivi2g03884 1001 SUPERFAMILY HMA, heavy metal-associated domain 51 119 IPR036163 GO:0046872
Vivi2g03884 1001 Gene3D - 50 119 - -
Vivi2g03884 1001 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Vivi2g03884 1001 SFLD p-type atpase 639 913 IPR044492 -
Vivi2g03884 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 402 930 IPR023298 -
Vivi2g03884 1001 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03884 Vivi-Chr2 150730583 150736253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03884 3 990 Primary Pumps ATPases AT1G63440 74.398 0.0 1494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03884 K17686 - gmx:100816893 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03884 2 150730583 150736253 Vivi2g03884 2 150730583 150736253 ECH