Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03867 ATGGATGAAAGAGAAGCTATGGCATTCTCTGATGGGTCTGGTTCATATTACATGCATAGAGGAGGAGGGGTTGGTGGGTCTGGTGGTAATGGAGGAGTGTTCCAACAAACACCTTCTGGGTTTAGAGCTTTGTCTAACAATGCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGTGGAGCCTCAGCATGATAGTTTTAGTCATGGTGGTGTTAGCAACAGCATTGGTTCATCTCCTGGTCCTGTAGTGCCTTATTCAGGAGAGCAGTCTGTGAAAAAGAAAAGAGGGAGACCTAGGAAGTATGGTCCTGATGTACCTGTTTCGTTGAGACTATCCTCTCCTATGTCTGCCACTGAGAATTCCATGTCTCCTTCGGAGAAACGACCGAGAGGACGCCCACCTGGAAGTGGAAGGAAACAACAACTAGCTGCTCTAGGTGAATGGATGAACAGCTCTGCCGGCCAGGCCTTTTCACCACATGTTATCACCATTGGAGTTGAGGAGGACATTGTAGCAAAGTTACAGGCATTTTCACAACTCAGACAACGTGCTTTATGCATCTTGTCAGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACGACTATCAGTGTTGCATTCGAGGGGCGATTCCAAATATTATGCTTATCTGGCTCTTACTTGGTTGCTGAAGATGGTGGACCTCAAAATCGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTCCGGACGGTCATGTTATTGGCGGTGGCGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGTTTCGTATATGGCGGCTCTAAGGCGAAGACTGCCACAAAGCAAGGGACTGCCACAAAAGAAGGTGATGGTTCAGAGCCTCAGAGTAGCGACCAGTTAGCTTCTCCAGGAAGTGAACCATCTAATCAAAACTACACAGCTTCTGGAACAGGAACAGGCACAGTGTGGCTTGGATCAAGGCCAGTAGATGAGAAAAGTGAACATCCACACACTGGTATTGACTTGATGCATGGGTGA 1044 0.4789 MDEREAMAFSDGSGSYYMHRGGGVGGSGGNGGVFQQTPSGFRALSNNAHGGSDGSAFSVEPQHDSFSHGGVSNSIGSSPGPVVPYSGEQSVKKKRGRPRKYGPDVPVSLRLSSPMSATENSMSPSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIGVEEDIVAKLQAFSQLRQRALCILSGTGTVSSVTLRQPASTTISVAFEGRFQILCLSGSYLVAEDGGPQNRTGGISVSLSSPDGHVIGGGVARLIAASPVQVVVCSFVYGGSKAKTATKQGTATKEGDGSEPQSSDQLASPGSEPSNQNYTASGTGTGTVWLGSRPVDEKSEHPHTGIDLMHG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03867 347 MobiDBLite consensus disorder prediction 330 347 - -
Vivi2g03867 347 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Vivi2g03867 347 PRINTS AT-hook-like domain signature 125 136 IPR017956 GO:0003677
Vivi2g03867 347 MobiDBLite consensus disorder prediction 30 84 - -
Vivi2g03867 347 ProSiteProfiles PPC domain profile profile. 154 292 IPR005175 -
Vivi2g03867 347 MobiDBLite consensus disorder prediction 280 347 - -
Vivi2g03867 347 MobiDBLite consensus disorder prediction 1 141 - -
Vivi2g03867 347 CDD DUF296 159 271 IPR005175 -
Vivi2g03867 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 273 - -
Vivi2g03867 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 307 IPR039605 GO:0003680
Vivi2g03867 347 MobiDBLite consensus disorder prediction 280 324 - -
Vivi2g03867 347 Gene3D - 159 289 - -
Vivi2g03867 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03867 Vivi-Chr2 150600000 150602837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03867 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.346 2.13e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03867 - - vvo:131637666 621.698