Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03862 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGCGTAGTAGGTCCAAATTTGAGTGTTTCATCCACTACTATACCATCCGCTCCCGTGTTTTACCCAACCGAAGATGAATTCAAAGATCCTTTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATCGTTCCTCCTAACAACTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCCGACTAAGACTCAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAGACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGGTTTTTAATGGTGTGAAGAGGTTTGGGGGGTATGATAAGGTTGTGGATGGAAAGAAATGGGGTGAGGTTGCTAGGTTTGTGAAATCTTCGGGGAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAATAAAGGAATGCCCGCGAGCACTTGTAAGAAAAGTGTGGAGGTGGAGGAAGATTGTAAGAGTGATCACGGGGTAATGGTACAGGCTTCGGTGTCGAAGAAGCATCACGGAGTTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGAAGTAAACCGTGATCAGAGTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATCCCTCTAGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCCGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCCAGGGTGCAAATAGAGAAAAAATTCTGGGAGATAGTGGAAGGTTCAGTTGGTGAGGTCGAGGTCATGTATGGAAATGATTTGGATACATCTATCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCGCAATCTATTGATGATAAGTTATGGGAAGAATACTCTACTAATCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAATTTTGTCATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTCGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATTGTTAAATCTTCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATCATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCATTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTCTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCCATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGGGATATGGTAAGGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAATTGAAGTTGAGTCATCAAGACTCAAGTTTCAAGAAAATTCATATAGATTATGTTAATGAGTTACTGACATTTAACCCTGTACCATGCAACGAGCCTCATTATCATAAGTTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAACATGTTCCAATTTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTCAACCAAGGCGTGGATGGATAGTGTCAGAAGCTGCATTTCAGTTAGAGATCCTGCTGAATTAGATGTTGGTGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATCTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCAGAGTTGAGGTTACTAAGGAATTACCATTCAGATGCTGTGTCGTGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGTTCACAGACAGGGAGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGATAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTCAAGAAGGCTATTTGCCGACAAAAAGCTTCCAAGGCACATGATTCTAAGATGCACCTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGAGAGAGAAGCAATTCGTCAGTTTATCACGTGTGCTTGGTGTTGCCATGCGTTGGGAGGAAAGAGCTGAAGAGATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATTTTTGTTAATCTTGCCTTACTTAATGATGTCAAAGAAGCGTTATCGGAAGCTAATTCTTGGTTAAGGAATGCAAAGCCATATTTAGCATCATCTAATTGTGTGTCAAACTCTGTGCGAAATGTCGGGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGCGCTTATTTGAATTGGATAATACTGTTCATGGAATAAGCAGTGGTTTATTGTTTAAAGTGGAAGATTTGATTACAAGAATTCAGTCTGCCATAGCATCTGGTGCATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGCGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTAGTTAATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATATCTAAACCTTGCAATTCTATAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATATGTTGTGGCAAGAGCAAGTGCATCAATTTTTTCGTCTAAGTTCTAGGGAACGAACTTGGTCATCATTATTGCAGCTCAAGGAACTTGGAGATTCTGTTGCCTTTAGTTGTTCAGAACTTGACTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATTGACAATATTGGAGCTTTATTCCAAAATGAAAAATCGCTGCTTCATGCACTGCTGAAGATAAAACAGACTCTAGATAGATCGCTATACATATATGGCAAGTTGCAAAATCAGAAGGAACCAAACCTATGCAACTGCTGCTTTGTTGATTCTCAAGACCAGGACTTTCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTTGGCGACTACAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAATATTCAAATGGAAGTTCCCTCCTGAGGTTCGAGAAACATATTGAATTGAACATCCTTGTCGAACTTCTGTCTGATGCTGAATGTTTTTCTCTGTGGATTGACGAAAAAGATCTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCATTCATCAACTTATATCGACAAAGATATTACCATCATCTCTAAAAAATTGATCACTGCGATAAAGGCAGGCTAG 4740 0.4015 MGKGKPRAVEKGVVGPNLSVSSTTIPSAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKVFNGVKRFGGYDKVVDGKKWGEVARFVKSSGKISDCAKHVLCQLYREHLYDYEIYCNRINKGMPASTCKKSVEVEEDCKSDHGVMVQASVSKKHHGVVDGLKVKDRKVKEVNRDQSCEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVRSLTEAQKWAEGIKDCVTKIELKLSHQDSSFKKIHIDYVNELLTFNPVPCNEPHYHKLKEYAKEARLLVQDIETALSTCSNLSELELLYSRACGIPIYVKGTKKLKRKISSTKAWMDSVRSCISVRDPAELDVGVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQSRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLGRVHRQGDHHNAVDELKSILDKGFSLKIQVDELPLVEIELKKAICRQKASKAHDSKMHLEFIQQLLKEATMLGIEREKQFVSLSRVLGVAMRWEERAEEILSSEASISDFEDMLRASENIFVNLALLNDVKEALSEANSWLRNAKPYLASSNCVSNSVRNVGDLQLLVSQSKHLKVHLEERRTLELVLNNCKKWECEAHSLLDDAQRLFELDNTVHGISSGLLFKVEDLITRIQSAIASGASLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVAEGLSHSAVSGALLKVLVNGVEWLRRALEGISKPCNSIRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHMLWQEQVHQFFRLSSRERTWSSLLQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGALFQNEKSLLHALLKIKQTLDRSLYIYGKLQNQKEPNLCNCCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAECFSLWIDEKDLLNQLIEKAFACKSGLREIVNHSSTYIDKDITIISKKLITAIKAG 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03862 1579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 296 IPR013083 -
Vivi2g03862 1579 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1129 - -
Vivi2g03862 1579 SUPERFAMILY ARID-like 78 195 IPR036431 GO:0003677
Vivi2g03862 1579 Pfam PHD-finger 249 295 IPR019787 -
Vivi2g03862 1579 FunFam Predicted protein 354 557 - -
Vivi2g03862 1579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1431 1496 IPR013083 -
Vivi2g03862 1579 Pfam PLU-1-like protein 894 988 IPR013637 -
Vivi2g03862 1579 Pfam PLU-1-like protein 1147 1400 IPR013637 -
Vivi2g03862 1579 Pfam PLU-1-like protein 998 1192 IPR013637 -
Vivi2g03862 1579 ProSitePatterns Zinc finger PHD-type signature. 1445 1489 IPR019786 -
Vivi2g03862 1579 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vivi2g03862 1579 ProSiteProfiles Zinc finger PHD-type profile. 246 296 IPR019787 -
Vivi2g03862 1579 CDD ARID 97 185 - -
Vivi2g03862 1579 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vivi2g03862 1579 SUPERFAMILY FYVE/PHD zinc finger 243 296 IPR011011 -
Vivi2g03862 1579 SUPERFAMILY Clavaminate synthase-like 341 567 - -
Vivi2g03862 1579 Gene3D - 78 198 IPR036431 GO:0003677
Vivi2g03862 1579 SMART JmjN_1 27 68 IPR003349 -
Vivi2g03862 1579 SUPERFAMILY FYVE/PHD zinc finger 1441 1491 IPR011011 -
Vivi2g03862 1579 Gene3D Cupin 28 537 - -
Vivi2g03862 1579 SMART bright_3 96 190 IPR001606 GO:0003677
Vivi2g03862 1579 SMART cupin_9 386 552 IPR003347 -
Vivi2g03862 1579 SMART PHD_3 248 294 IPR001965 -
Vivi2g03862 1579 SMART PHD_3 1444 1490 IPR001965 -
Vivi2g03862 1579 SMART ARID_2 95 185 - -
Vivi2g03862 1579 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Vivi2g03862 1579 Pfam JmjC domain, hydroxylase 419 535 IPR003347 -
Vivi2g03862 1579 Pfam jmjN domain 29 62 IPR003349 -
Vivi2g03862 1579 CDD PHD_RSF1 249 293 - -
Vivi2g03862 1579 ProSiteProfiles JmjC domain profile. 386 552 IPR003347 -
Vivi2g03862 1579 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vivi2g03862 1579 Pfam C5HC2 zinc finger 629 681 IPR004198 -
Vivi2g03862 1579 ProSitePatterns Zinc finger PHD-type signature. 249 293 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03862 Vivi-Chr2 150551298 150571083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03862 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 7.71e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi2g03862 PLU-1 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03862 K11446 - gmx:100789512 2519.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03862 2 150551298 150571083 Vivi2g03862 2 150551298 150571083 ECH
Vivi1g02248 1 47394929 47403707 Vivi2g03862 2 150551298 150571083 PCT