Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03861 ATGGGAAAGGGTAAACCTAGGGCTGTTGAAAAAGGCGTAGTAGGTCCAAATTTGAGTGTTTCATCCACTACTATACCATCCGCTCCCGTGTTTTACCCAACCGAAGATGAATTCAAAGATCCTTTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATCGTTCCTCCTAACAACTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCCGACTAAGACTCAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAGACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTGTAGTAAGAAGCTTAAGAAGAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGGTTTTTAATGGTGTGAAGAGGTTTGGGGGGTATGATAAGGTTGTGGATGGAAAGAAATGGGGTGAGGTTGCTAGGTTTGTGAAATCTTCGGGGAAGATTTCGGATTGTGCTAAGCATGTCTTGTGTCAGTTGTATAGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAATAAAGGAATGCCCGCGAGCACTTGTAAGAAAAGTGTGGAGGTGGAGGAAGATTGTAAGAGTGATCACGGGGTAATGGTACAGGCTTCGGTGTCGAAGAAGCATCACGGAGTTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGAAGTAAACCGTGATCAGAGTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATCCCTCTAGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCCGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCCAGGGTGCAAATAGAGAAAAAATTCTGGGAGATAGTGGAAGGTTCAGTTGGTGAGGTCGAGGTCATGTATGGAAATGATTTGGATACATCTATCTATGGGAGTGGTTTCCCAAATGAAACTAATCAGAAACCGCAATCTATTGATGATAAGTTATGGGAAGAATACTCTACTAATCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTCGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAATTTTGTCATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATACGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCACGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTCGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATTGTTAAATCTTCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATCATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCATTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTCCGTCTTCTCTATCGTCATTCACTTGGTGAATTGAATGACTTGGCATTTTCAATTGACAAATATATTTCTGAAGAAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCCATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGGGATATGGTAAGGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAATTGAAGTTGAGTCATCAAGACTCAAGTTTCAAGAAAATTCATATAGATTATGTTAATGAGTTACTGACATTTAACCCTGTACCATGCAACGAGCCTCATTATCATAAGTTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAACATGTTCCAATTTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTCAACCAAGGCGTGGATGGATAGTGTCAGAAGCTGCATTTCAGTTAGAGATCCTGCTGAATTAGATGTTGGTGTTCTTTACAAGTTAAAATCAGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATCTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCAGAGTTGAGGTTACTAAGGAATTACCATTCAGATGCTGTGTCGTGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGTTCACAGACAGGGAGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGATAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCCTCTAGTTGAGATTGAGCTCAAGAAGGCTATTTGCCGACAAAAAGCTTCCAAGGCACATGATTCTAAGATGCACCTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGAGAGAGAAGCAATTCGTCAGTTTATCACGTGTGCTTGGTGTTGCCATGCGTTGGGAGGAAAGAGCTGAAGAGATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATTTTTGTTAATCTTGCCTTACTTAATGATGTCAAAGAAGCGTTATCGGAAGCTAATTCTTGGTTAAGGAATGCAAAGCCATATTTAGCATCATCTAATTGTGTGTCAAACTCTGTGCGAAATGTCGGGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACGCTTGAATTAGTTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGCGCTTATTTGAATTGGATAATACTGTTCATGGAATAAGCAGTGGTTTATTGTTTAAAGTGGAAGATTTGATTACAAGAATTCAGTCTGCCATAGCATCTGGTGCATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGCGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTAGTTAATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATATCTAAACCTTGCAATTCTATAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATATGTTGTGGCAAGAGCAAGTGCATCAATTTTTTCGTCTAAGTTCTAGGGAACGAACTTGGTCATCATTATTGCAGCTCAAGGAACTTGGAGATTCTGTTGCCTTTAGTTGTTCAGAACTTGACTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATTGACAATATTGGAGCTTTATTCCAAAATGAAAAATCGCTGCTTCATGCACTGCTGAAGATAAAACAGACTCTAGATAGATCGCTATACATATATGGCAAGTTGCAAAATCAGAAGGAACCAAACCTATGCAACTGCTGCTTTGTTGATTCTCAAGACCAGGACTTTCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTTGGCGACTACAAGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAATATTCAAATGGAAGTTCCCTCCTGAGGTTCGAGAAACATATTGAATTGAACATCCTTGTCGAACTTCTGTCTGATGCTGAATGTTTTTCTCTGTGGATTGACGAAAAAGATCTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCATTCATCAACTTATATCGACAAAGATATTACCATCATCTCTAAAAAATTGATCACTGCGATAAAGGCTAGCAAAGTGGCTGTTGTCCATGATCAGGGTGATAGTTGTGACCTTGAGTTGGCTTTAGCAAAATACTTATGGAAGATTCAAGTCGATATGTTGTTAAGTGGTGCAGTTAAGCCCACTATTGAAGAGATTCAGAAACATCTGAAAGAGGGAATGTCTATGGAAATATCACCCAAAGATCACTATATGCTGAAACTTACTAATGTGAAGTGCTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGATATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTGTATTGGAAGGTGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAAGATGTTAAGAGCTCGATGCATGCTTTATTGTATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCGATGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATCTACATTTGCCCTGCATGCAACCCGTGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTAGAGGAGCCTAAAACCCCTTCTCCCAGGCATAATAACCCCATAAAGAAACGGAAGAGAGATGTGCCAAGTGACACTTGCAAGGTACATGCACCCAGGAATGAAGATGATAGTAATTTTAGGTTAGATGGGATAGAATGTCTAAGGTGGAAAATTCGCAAGTCATTTAGAAGAGTAACTAAAAGACGTGTTGATCTTCAAAGTCTCTCTCCATTTATATGGATAAAACCATAA 5508 0.4007 MGKGKPRAVEKGVVGPNLSVSSTTIPSAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHCSKKLKKKIVFEGEDLDLCKVFNGVKRFGGYDKVVDGKKWGEVARFVKSSGKISDCAKHVLCQLYREHLYDYEIYCNRINKGMPASTCKKSVEVEEDCKSDHGVMVQASVSKKHHGVVDGLKVKDRKVKEVNRDQSCEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDKLWEEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELNDLAFSIDKYISEEKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVRSLTEAQKWAEGIKDCVTKIELKLSHQDSSFKKIHIDYVNELLTFNPVPCNEPHYHKLKEYAKEARLLVQDIETALSTCSNLSELELLYSRACGIPIYVKGTKKLKRKISSTKAWMDSVRSCISVRDPAELDVGVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQSRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLGRVHRQGDHHNAVDELKSILDKGFSLKIQVDELPLVEIELKKAICRQKASKAHDSKMHLEFIQQLLKEATMLGIEREKQFVSLSRVLGVAMRWEERAEEILSSEASISDFEDMLRASENIFVNLALLNDVKEALSEANSWLRNAKPYLASSNCVSNSVRNVGDLQLLVSQSKHLKVHLEERRTLELVLNNCKKWECEAHSLLDDAQRLFELDNTVHGISSGLLFKVEDLITRIQSAIASGASLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVAEGLSHSAVSGALLKVLVNGVEWLRRALEGISKPCNSIRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHMLWQEQVHQFFRLSSRERTWSSLLQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGALFQNEKSLLHALLKIKQTLDRSLYIYGKLQNQKEPNLCNCCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLGDYKCSYCEILKGKSQYSNGSSLLRFEKHIELNILVELLSDAECFSLWIDEKDLLNQLIEKAFACKSGLREIVNHSSTYIDKDITIISKKLITAIKASKVAVVHDQGDSCDLELALAKYLWKIQVDMLLSGAVKPTIEEIQKHLKEGMSMEISPKDHYMLKLTNVKCLGLHWVELAKKISNDSGALGLDKVYELVLEGENLPVDVNEELKMLRARCMLYCICRKPFDPGRMIACYRCSEWYHFDCMKLSCTQDIYICPACNPCTGLPTNHDRLTTGKLEEPKTPSPRHNNPIKKRKRDVPSDTCKVHAPRNEDDSNFRLDGIECLRWKIRKSFRRVTKRRVDLQSLSPFIWIKP 1835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03861 1835 FunFam Predicted protein 354 557 - -
Vivi2g03861 1835 Pfam JmjC domain, hydroxylase 419 535 IPR003347 -
Vivi2g03861 1835 SUPERFAMILY FYVE/PHD zinc finger 243 296 IPR011011 -
Vivi2g03861 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1431 1496 IPR013083 -
Vivi2g03861 1835 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1102 - -
Vivi2g03861 1835 SUPERFAMILY ARID-like 78 195 IPR036431 GO:0003677
Vivi2g03861 1835 SUPERFAMILY Clavaminate synthase-like 342 567 - -
Vivi2g03861 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 296 IPR013083 -
Vivi2g03861 1835 Pfam C5HC2 zinc finger 629 681 IPR004198 -
Vivi2g03861 1835 Pfam PHD-finger 249 295 IPR019787 -
Vivi2g03861 1835 ProSitePatterns Zinc finger PHD-type signature. 1701 1741 IPR019786 -
Vivi2g03861 1835 Pfam jmjN domain 29 62 IPR003349 -
Vivi2g03861 1835 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vivi2g03861 1835 ProSitePatterns Zinc finger PHD-type signature. 1445 1489 IPR019786 -
Vivi2g03861 1835 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Vivi2g03861 1835 ProSiteProfiles Zinc finger PHD-type profile. 246 296 IPR019787 -
Vivi2g03861 1835 CDD ARID 97 185 - -
Vivi2g03861 1835 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vivi2g03861 1835 SMART PHD_3 248 294 IPR001965 -
Vivi2g03861 1835 SMART PHD_3 1700 1742 IPR001965 -
Vivi2g03861 1835 SMART PHD_3 1444 1490 IPR001965 -
Vivi2g03861 1835 SMART JmjN_1 27 68 IPR003349 -
Vivi2g03861 1835 Pfam PLU-1-like protein 894 987 IPR013637 -
Vivi2g03861 1835 Pfam PLU-1-like protein 1147 1400 IPR013637 -
Vivi2g03861 1835 Pfam PLU-1-like protein 997 1193 IPR013637 -
Vivi2g03861 1835 SMART bright_3 96 190 IPR001606 GO:0003677
Vivi2g03861 1835 SMART cupin_9 386 552 IPR003347 -
Vivi2g03861 1835 SMART ARID_2 95 185 - -
Vivi2g03861 1835 SUPERFAMILY FYVE/PHD zinc finger 1441 1491 IPR011011 -
Vivi2g03861 1835 Gene3D - 80 195 IPR036431 GO:0003677
Vivi2g03861 1835 Gene3D Cupin 28 537 - -
Vivi2g03861 1835 CDD PHD_RSF1 249 293 - -
Vivi2g03861 1835 SUPERFAMILY FYVE/PHD zinc finger 1695 1748 IPR011011 -
Vivi2g03861 1835 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vivi2g03861 1835 ProSiteProfiles JmjC domain profile. 386 552 IPR003347 -
Vivi2g03861 1835 MobiDBLite consensus disorder prediction 1755 1786 - -
Vivi2g03861 1835 ProSitePatterns Zinc finger PHD-type signature. 249 293 IPR019786 -
Vivi2g03861 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1685 1743 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03861 Vivi-Chr2 150551298 150573096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03861 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 7.68e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi2g03861 PLU-1 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03861 K11446 - gmx:100789512 2924.81