Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03844 ATGGCGAAACTATTATCCCTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTCTCCGCTCGATCTCACTATCCCTCCATGCCTTCCTATCCCAAAGGCGAACCTGGTACCAGCAGTCCGGCCGCCGCCGTCACCGAGGCTTCCAACGTCACCGGACTTTTCTCCGTTAACGGCATGACTTGCTCCGCTTGCGCCGGATCCGTCGAGAAATCCATCAAACGTCTCCATGGAATTCAGGAAGCTGTTGTTGATGTCCTCAACAACCGTGCTCGCGTCATCTTTCATCCCTCGTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCGGCGTTACTAGCGGATATTACCAATGATATTTCAATTCAAATATGCCGTATACAAATCAAAGGAATGACATGCACGTCGTGCTCTACTGCTGTTGAATCTGCGCTGATCGCCCTCGCCGGAGTCATTGAAGCTCGAGTAGCTTTAGCAACTGAAGAAGCTAATGTTCAATATAACCCAAACATAGTTACCTATAGCCAAATATTGGAAGCAGTTGATGATGCTGGATTTGAAGCCATTCTTATCAGTTCAAGTGAAGATTTAAGCAAAATAGATCTTCAAGTGGAAGGTGATCTCACCGATCATTCCATGATTAAGCTTATCGAAGATTCTCTTCGATCGCTCCCTGGAGTTTTGGAATTACGCACGAGTTTCGAATTGAGTAAAATTTCACTTTCTTATAAACCGGATTTAACAGGACCAAGAGACTTCATCAATGTGATTCAAGAAACTAGTAATGGAAATTTGAAGGCCAAGATATTTCCGGGTGAAGGAGGAAGAAGAGATGCTCATAGAAACAAGGAAATAAAAAGTTATTATAAATCTTTTATGTGGAGTTTGGTGTTTACTGTTCCAGTTTTTCTTACTTCCATGGTGTTTATGTATATACCTGGAATAAAGGATTTATTGGATCACAAAGTTGTGAAAATGCTTACTGTTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCGGTGCAGTTCGTATTCGGGTGGAGATTTTACGTTGGTTCTTATAAATCATTGCGCCGTGGCTCTGCTAATATGGATGTTCTTATTGCTCTTGGAACAAATGCTGCTTATTTCTATTCTGTTTATTCTGTCTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTCTTTGAGACTAGTGCAATGCTTATTTCGTTTATTCTCTTAGGAAAGTATCTTGAGATTTTAGCTAAAGGGAAAACATCGAATGCAATTGCTAAGCTCATGAATTTGACACCTGATACTGCTATATTGTTGAGTTTGGATGATGAAGAGAATGTTGTTAGAGAGGAAGAAATTGATAGTAGGTTGGTTCAGAAGAATGACGTGATTAAAATTATTCCGGGTGCAAAAGTAGCATCGGATGGTTTGGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCACGTCCTGTGTCTAAGAGGAAAGATGATACTGTTATTGGTGGAACATTGAATGAGAATGGAGTTTTGCATGTTAAGGCAACAAAAGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTCGACTTGTTGAGTCTGCACAAATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGATCGCATTTCCACATACTTTGTGCCTTTGGTGATTTTGATCTCATTCTCAACCTGGCTTGCTTGGTTTTTAGCTGGAAAATATCATGCTTACCCAAAATCATGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTGATGGTTATTGCCTGTCCTTGTGCTTTGGGCTTAGCCACACCTACAGCTGTTATGGTTGGCACTGGAGTTGGCGCATCTCAGGGTGTTTTGATCAAAGGCGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACGGGTACGCTCACTATTGGGAAGCCTGTGATAGTAAATACGAAACTATTGATAAAAATGGTACTCCGGGAGTTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAGCATCCTCTAGCTAAGGCTGTTGTTGAGTACGCCAAGAAATTTAAAGATGAGGAGAACCCTTCTTGGCCAGAAGCACGTGATTTTGTTTCCATTACTGGACATGGAGTAAAGGCCACCGTTCGTAACAAGGAAATAATGGTGGGTAATAAGAGCTTGTTCACTGACCACAATATTGCAATTCCTGCTGTTGCTGAAGATCTACTCGCTGAAGCAGAAAATTTGGCTCAAACAGGAATTGTAGTATCTATAAATGGAGAAATAGCTGGGGTTTTAGCAGTATCTGATCCATTGAAATCAGGTGCTCAAGAAGTTATTTCTATTCTCAAGTCTATGAAAATCAAGAGCATCATGGTGACTGGGGACAACTGGGGAACTGCTAATTCCATTGCCAGGGAAGTTGGGATTGAAGATGTTATTGCTGAGGCGAAACCGGATCAGAAAGCAGATAAAGTTAAAAACTTGCAGGCTTCTGGATACACAGTGGCTATGGTAGGGGATGGCATCAACGATTCACCAGCACTTGTAGCAGCAGATGTTGGAATGGCAATAGGTGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTCCTAATGAAGAGCAACTTAGAGGATGTCATAACTGCCATCGACCTTTCAAGAAAAACATTTTCCCGTATACGCCTTAATTATATTTGGGCTTTGGGCTATAATGTTCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGATTGCCACCTTGGATTGCTGGAGCTGCTATGGCTGCTTCTTCTGTTAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGGCCCAAGAAGCTGAACAGCCTTGACATAGGAGCCATAACAATCGAGACATCAAGTGATCCTTTGATTATACACGATGACTGA 3003 0.4222 MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKGEPGTSSPAAAVTEASNVTGLFSVNGMTCSACAGSVEKSIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLADITNDISIQICRIQIKGMTCTSCSTAVESALIALAGVIEARVALATEEANVQYNPNIVTYSQILEAVDDAGFEAILISSSEDLSKIDLQVEGDLTDHSMIKLIEDSLRSLPGVLELRTSFELSKISLSYKPDLTGPRDFINVIQETSNGNLKAKIFPGEGGRRDAHRNKEIKSYYKSFMWSLVFTVPVFLTSMVFMYIPGIKDLLDHKVVKMLTVGEVIRWVLATPVQFVFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLSLDDEENVVREEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKDDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISTYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLIKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNKEIMVGNKSLFTDHNIAIPAVAEDLLAEAENLAQTGIVVSINGEIAGVLAVSDPLKSGAQEVISILKSMKIKSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGAITIETSSDPLIIHDD 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03844 1000 Pfam haloacid dehalogenase-like hydrolase 652 874 - -
Vivi2g03844 1000 CDD HMA 132 193 IPR006121 GO:0046872
Vivi2g03844 1000 Gene3D - 424 546 - -
Vivi2g03844 1000 Gene3D - 623 917 IPR023214 -
Vivi2g03844 1000 SFLD Haloacid Dehalogenase 638 912 - -
Vivi2g03844 1000 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 931 IPR023298 -
Vivi2g03844 1000 FunFam Copper-transporting ATPase HMA5 50 120 - -
Vivi2g03844 1000 SUPERFAMILY HMA, heavy metal-associated domain 50 117 IPR036163 GO:0046872
Vivi2g03844 1000 ProSiteProfiles Heavy-metal-associated domain profile. 203 270 IPR006121 GO:0046872
Vivi2g03844 1000 Pfam E1-E2 ATPase 455 634 - -
Vivi2g03844 1000 Pfam Heavy-metal-associated domain 54 114 IPR006121 GO:0046872
Vivi2g03844 1000 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 656 670 - -
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Vivi2g03844 1000 PRINTS P-type cation-transporting ATPase superfamily signature 492 506 - -
Vivi2g03844 1000 Gene3D - 742 791 IPR023299 GO:0000166
Vivi2g03844 1000 Gene3D - 663 741 IPR023299 GO:0000166
Vivi2g03844 1000 ProSiteProfiles Heavy-metal-associated domain profile. 50 116 IPR006121 GO:0046872
Vivi2g03844 1000 Gene3D - 204 273 - -
Vivi2g03844 1000 FunFam Copper-transporting ATPase 1, putative 424 546 - -
Vivi2g03844 1000 PRINTS Copper-transporting ATPase 1 signature 51 76 - -
Vivi2g03844 1000 PRINTS Copper-transporting ATPase 1 signature 152 173 - -
Vivi2g03844 1000 PRINTS Copper-transporting ATPase 1 signature 77 100 - -
Vivi2g03844 1000 PRINTS Copper-transporting ATPase 1 signature 106 126 - -
Vivi2g03844 1000 SUPERFAMILY HMA, heavy metal-associated domain 128 199 IPR036163 GO:0046872
Vivi2g03844 1000 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 983 - -
Vivi2g03844 1000 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Vivi2g03844 1000 FunFam Copper-transporting ATPase HMA5 127 198 - -
Vivi2g03844 1000 FunFam Probable copper-transporting ATPase HMA5 758 917 - -
Vivi2g03844 1000 ProSitePatterns Heavy-metal-associated domain. 56 85 IPR017969 GO:0046872
Vivi2g03844 1000 SUPERFAMILY Calcium ATPase, transduction domain A 456 542 IPR008250 -
Vivi2g03844 1000 Gene3D - 49 118 - -
Vivi2g03844 1000 SUPERFAMILY HMA, heavy metal-associated domain 201 265 IPR036163 GO:0046872
Vivi2g03844 1000 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Vivi2g03844 1000 ProSitePatterns E1-E2 ATPases phosphorylation site. 658 664 IPR018303 -
Vivi2g03844 1000 NCBIfam copper ion binding protein 132 193 IPR006122 GO:0005507
Vivi2g03844 1000 NCBIfam copper ion binding protein 54 115 IPR006122 GO:0005507
Vivi2g03844 1000 CDD HMA 54 116 IPR006121 GO:0046872
Vivi2g03844 1000 Gene3D - 128 200 - -
Vivi2g03844 1000 SFLD p-type atpase 638 912 IPR044492 -
Vivi2g03844 1000 CDD P-type_ATPase_Cu-like 295 970 - -
Vivi2g03844 1000 NCBIfam HAD-IC family P-type ATPase 409 944 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi2g03844 1000 NCBIfam heavy metal translocating P-type ATPase 369 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi2g03844 1000 SUPERFAMILY HAD-like 655 966 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03844 Vivi-Chr2 150254074 150258947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03844 3 989 Primary Pumps ATPases AT1G63440 74.096 0.0 1492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03844 K17686 - gmx:100816893 1554.65