Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03839 ATGGGTCATACTTGCGTGGCTGCAGCTTGTTTTTGGGCACTTACAAGCTTTAAAGAAGCTATCTATGAAGACCCAAATCTAGCTTTATCAAACTGGAATATGCTAGAGTCAGATCTTTGTAACTGGTTTGGTGTCACTTGCACTGTTTCTGGAGATCATGTCACCAAGTTAAATATATCGGGTTCATCGTTGAAGGGTTTTCTTGCGAGGGAATTGGGGCAAATTACCTATTTGCAAGAACTAGTTTTGCACGGGAACAATCTGATTGGAACTATACCGAAAGAATTGTGCATGTTGAAATCTCTCCAGGTGTTGGATTTGGGAATGAATCACTTGTCTGGACCAATTCCTACGGAGATTGGAAATTTAACTCTACTTGTGAACATAAACCTACAGTCCAACGGGTTGACTGGTAGATTACCTCCTGAGCTTGGAAATTTGAGATACCTTCAAGAACTCTGGCTTGATAGGAACAGGCTTCAAGGACCTATTCCTGCTAGTGGAACTTATAGTTTTGCTTCAACTATGCATGGAATGTATGTTTCAAAAGATAATGCAACTGGCTTGTGCCGTTCACCTCAGTTAAAATTAGCAGACTTTTCATATAACTTTTTAGTCGGTAGCATACCAAAATGCCTGGAGTATCTTCCAAGGATAAGCTTTCAAGGGAACTGCCTCCAGAGCAATGATCCAAAGCAGCGGCCTTCCACACAATGTGGTGGTGCTTCACCTGCCAAGAGTCAGCCAGTAGCGAGCAACCAATACCACCAAATAGCTGATCATGCACGCAAGCATCACGGAACTTCAGAACCTACTTGGCTTTTGGCTTTAGAAATAGTAGCAGGAACTATGGTCGGTTCTCTCTTTCTGGTTGCGGCTCTCGCTACTGTTCAAAGATGTAACAACAAATCTTCTATCATTATTCCTTGGAAAAAATCAGGCAGCCTGAAAGATCACAATGCAGTATATATAGACCCGGATATGTTAAAGGACGTGAGAAGGTATAGCAGACAAGAGCTAGAAGAGGCGTGTGAAGATTTCAGTAACATAATTGGGTCCTCACCGGACAGTGTGGTCTACAAGGGAACTATGAAAGGTGGACCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAGGAGAGTTGGACAGGGTATCTGGAACTCTACTTCCAGAGAGAGGTGGCAGAATTGGCAAAGTTAGACCATGAGAATACTGGAAAACTACTGGGATATTGTAGAGAGAGCAATCCGTTTTCAAGGATGCTGGTTTTTGATTATGCTTCAAATGGGACACTTCACGAGCATTTACATTGTTATGAAGAAGGGTGCCAGTTCTCCTGGACACGGCGTATGAAAATTGTCATAGGCATTGCACGTGGACTCAAGTATTTGCACACAGAAGTTGAACCTCCGTTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCCGGTACTATTAGCAGCCAAGGTGCTGTTTGTGTTCTTCCAAACTCTCTTGAGGCACGCCATCTTGATACCAAAGGAAATGTACACGCTTTTGGAGTACTTCTACTAGAGATAATCAGTGGCCGGCTTCCACACTGTAAGGAGAAAGGTTACTTGGTGGATTGGGCGAAAGACTATCTTGAAAAGCCCGAAGTAATGTCACAATTGGTGGATCCAGAACTGAAAAATTTTAGACACGATGATCTCAAAGTGATATGCGAGGTGATAACTCTATGTATCAATCCTGATACAGCTGCCCGTCCATCTATGCGAGAATTATATAGCATGCTGGAGAGCAGAATCGACACATCAGTTAACATAGATCTCAAGTCGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCATAA 1938 0.4236 MGHTCVAAACFWALTSFKEAIYEDPNLALSNWNMLESDLCNWFGVTCTVSGDHVTKLNISGSSLKGFLARELGQITYLQELVLHGNNLIGTIPKELCMLKSLQVLDLGMNHLSGPIPTEIGNLTLLVNINLQSNGLTGRLPPELGNLRYLQELWLDRNRLQGPIPASGTYSFASTMHGMYVSKDNATGLCRSPQLKLADFSYNFLVGSIPKCLEYLPRISFQGNCLQSNDPKQRPSTQCGGASPAKSQPVASNQYHQIADHARKHHGTSEPTWLLALEIVAGTMVGSLFLVAALATVQRCNNKSSIIIPWKKSGSLKDHNAVYIDPDMLKDVRRYSRQELEEACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEESWTGYLELYFQREVAELAKLDHENTGKLLGYCRESNPFSRMLVFDYASNGTLHEHLHCYEEGCQFSWTRRMKIVIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGTISSQGAVCVLPNSLEARHLDTKGNVHAFGVLLLEIISGRLPHCKEKGYLVDWAKDYLEKPEVMSQLVDPELKNFRHDDLKVICEVITLCINPDTAARPSMRELYSMLESRIDTSVNIDLKSSSSLAWAELALLS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03839 645 Pfam Protein tyrosine and serine/threonine kinase 349 618 IPR001245 GO:0004672|GO:0006468
Vivi2g03839 645 Gene3D Ribonuclease Inhibitor 11 121 IPR032675 -
Vivi2g03839 645 MobiDBLite consensus disorder prediction 227 254 - -
Vivi2g03839 645 FunFam Inactive receptor-like serine/threonine-protein kinase 319 426 - -
Vivi2g03839 645 SUPERFAMILY Protein kinase-like (PK-like) 326 619 IPR011009 -
Vivi2g03839 645 Gene3D Transferase(Phosphotransferase) domain 1 427 635 - -
Vivi2g03839 645 Gene3D Phosphorylase Kinase; domain 1 320 426 - -
Vivi2g03839 645 Gene3D Ribonuclease Inhibitor 122 261 IPR032675 -
Vivi2g03839 645 ProSiteProfiles Protein kinase domain profile. 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03839 645 PANTHER PROTEIN MALE DISCOVERER 2 11 645 - -
Vivi2g03839 645 SUPERFAMILY L domain-like 11 219 - -
Vivi2g03839 645 FunFam Nuclear pore complex protein NUP107 8 166 - -
Vivi2g03839 645 Pfam Leucine rich repeat N-terminal domain 13 47 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03839 Vivi-Chr2 150202805 150209433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03839 13 624 Receptor kinase-like Gene Family AT2G35620 28.708 7.52e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi2g03839 PK_Tyr_Ser-Thr 7.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03839 - - gmx:100792145 1039.25