Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03822 ATGTCGACGACAAGGTCTCCGAGCCGCTCCTCCGAAGACATCGTCGATTCGACGCCGTTTCTTCCCAATTCCGGCGCCTCCTCTGACGAAAACAACTCCGGCCGTCGAGTCGTTCGTCGACAGAGGCTTCTCCAAGCGGCGCGGTTCCTCCGGCAAGCGAGCGGGAGGAGAATGATGCGCGAGCCCTCGGTTGTTGTCCGTGAAGCTGCGGCGGAGCAATTGGAGGAACGGCAAAGTGATTGGGCTTATTCCAAACCCGTAGTGATTCTCGACATTGTTTGGAACTTTGCGTTCGTTGTTGTTGCTACAACCGCTTTGTTTCTGAGCAGTAATGAATCGCCGGAAATGCCTCTTAGATTGTGGATTGTTGGTTACGTTCTGCAATGCGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGAAGACGGAGAAGGTTTCAACGTTCATCTTCTGCTGTAGCCGTAGCAGGTTCTGATAGGGTTGGTACTAGCAGTGGGAATTTGAGTTCAGCTTCTCCTTCTGTTTCTGGTTCAAGTTATGTTTCGTTGGCGCAATTTGAAGAAGAGGGTACAAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAACTTTATCCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAATCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCCTGTATAATTGGTATCGCTGTTTGCTGCTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAATTGTCAAAATTCAAATTCCGAAAAGTTGAAAGTAATGAGAAGCAAACTGGTAATACCGAAGAACCTGGTGGAGGAGTAATGACTGAATGCCGGGCTGATTCACCTGTTGAACATGTTCTTGCTGAAGAGGATGCGGAATGTTGCATCTGCCTTTCCCCTTACGATGACGGAGTTGAACTACGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATAAACGCCACATGCCCCCTCTGCAAGTATAACATTTTGAAAAGTAGTAGCCTCGGTGAAGAGGGAGTGTAG 1167 0.4636 MSTTRSPSRSSEDIVDSTPFLPNSGASSDENNSGRRVVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVATTALFLSSNESPEMPLRLWIVGYVLQCVLHMVCVCFEYRRRRRFQRSSSAVAVAGSDRVGTSSGNLSSASPSVSGSSYVSLAQFEEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGGQTLSQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKVESNEKQTGNTEEPGGGVMTECRADSPVEHVLAEEDAECCICLSPYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSLGEEGV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03822 388 FunFam E3 ubiquitin-protein ligase At1g12760 319 384 - -
Vivi2g03822 388 MobiDBLite consensus disorder prediction 1 36 - -
Vivi2g03822 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 385 IPR013083 -
Vivi2g03822 388 MobiDBLite consensus disorder prediction 1 32 - -
Vivi2g03822 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Vivi2g03822 388 SUPERFAMILY RING/U-box 323 380 - -
Vivi2g03822 388 Pfam Ring finger domain 332 374 IPR001841 -
Vivi2g03822 388 SMART ring_2 333 373 IPR001841 -
Vivi2g03822 388 PANTHER TARGET OF ERK KINASE MPK-1 54 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03822 Vivi-Chr2 149856840 149863694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03822 1 381 C3H Transcription Factor Family AT1G68070 47.396 1.10e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03822 - - gmx:100790497 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02311 1 48900994 48905919 Vivi2g03822 2 149856840 149863694 PCT