LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g03821	ATGGAGAGACAAAATATTGCGTATCAAATTCTGGTTGATCGGTGTCGGAGCTTGGAGGAGAAACAAGTGAAATTAACGGAGCAGTTCAATGAGTTGATGCAGGAGAAGGTCAAAGACGATGAAGATTATTCAGCCGCTGGTTTCTTTTCCGGTTTCTTCTTCTCTATAAGTCCATATGCTAATGTTTTGAAATGCATGGGACATGCCGTTCATATCCATAGAGTTTCCTCCGGCGAGATCATATACTGGAATGATTCGGCAGAAACTCTATATGGATGGAGGGAGAATGAGATAATTGGACAAAGAGTAGCGGATTTCCTAGTTGCTGAGGAATATTACGCATCTCTACGAAAAATTCTACAACACTTGATCACAGGAGTGCCGTGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAATATTTATGGCAATGGTAACAAAAACTCCTTTTTACGAAGGCGGCGAGCTTGTTGGTGTCATCACTGTTTCTAGTGATGCATCTGTATTTAACTCTAAGGGTTTCGAAGAACGAAGAACTTGCCAATCTCGTGTGAAGGACCAACCGGGAATTCAAAGGTTAAAAAGGATTCAGTGGCCTCCACGTCCACAAATTGCATCATCTGTTCCTAATGTGGCAGCTAGAGTCCTTGCTAAGCTTCGAAGTGGGAGAGGTGGAGAACAAAGGAAGGATACTAGAAGTATTAAAGATAATTGCACAACTGATGATAATTCAGGAAATCCAAAAATTTCTGCACATGGAACTTCTAGTGATCTCAGAGATAGTTCAGCTAAACCATTCTCAAAGGACTGTTGTGAATGTTCTGGTTCTCCCTATCCCGAAGACCCTTTGTTAAGATTACGCTGTCCGTTCAATCCAAAGAAATTGGAGCCAGAAGCAATGAATAAGGATGAAGTGCAAAAGCAACAAGAAGGGTTGCCGTTGGCGAGCTCGAAGGAGAGTATTGGTGACAATCCGAGTTCATCAAGCAAAGAGAAAGGTGAATCAAACTCTATTGTAGAGTGTGATATCCATTGGGAAGACCTTCAATTAAGAAAAGAGATTGGGCAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGCGTCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATATGCTGAGGAGACTTTAAGAGACTACAAAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATCTATTCTCAGGAAAGGCATGCCATTGTGACAGAGTTGTTACCTAGAGGAAGCCTTTTCAGAACACTTCACAAGAACAATCAAACATTTGACATCAGAAGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATAGTGCATAGAGACCTAAAATCTTCCAACCTGCTTGTTGATAAAAACTGGAATGTCAAGGTTGGAGACTTTGGCTTGTCGAAGTTGAAGGAAGCAACTTTATTGACTACCAAATCCGGAAGAGGAACCTTTTATTGTTCTCTCTGTCAAATGCAGCCTCAATGGATGGCCCCTGAAGTTCTCCGCAGTGAACCTTCAAATGAAAAGTCCGATGTGTTCAGCTATGGCGTCGTCCTATGGGAAATAATGACTCAATCTATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTAGTAGGCTTTATGAATAGAAGACTGGACCTACCGGAGGGGCTGGATCCCCATGTAGCTTCAATCATAAATGACTGCTGGCAAAGTGATCCAGAACAACGACCATCATTTGAAGAGCTAGTGCAGAGAATGATGTTGATTCTCAACAGAGTAACAACTTTGTCATTGAAGAGAATTGCAGAATCCTGA	1890	0.4143	MERQNIAYQILVDRCRSLEEKQVKLTEQFNELMQEKVKDDEDYSAAGFFSGFFFSISPYANVLKCMGHAVHIHRVSSGEIIYWNDSAETLYGWRENEIIGQRVADFLVAEEYYASLRKILQHLITGVPWSGQFPFKKRSGEIFMAMVTKTPFYEGGELVGVITVSSDASVFNSKGFEERRTCQSRVKDQPGIQRLKRIQWPPRPQIASSVPNVAARVLAKLRSGRGGEQRKDTRSIKDNCTTDDNSGNPKISAHGTSSDLRDSSAKPFSKDCCECSGSPYPEDPLLRLRCPFNPKKLEPEAMNKDEVQKQQEGLPLASSKESIGDNPSSSSKEKGESNSIVECDIHWEDLQLRKEIGQGSYAVVYHGIWNASDVAVKVYFGNGYAEETLRDYKKEVDIMKRLRHPNVLLFMGAIYSQERHAIVTELLPRGSLFRTLHKNNQTFDIRRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKEATLLTTKSGRGTFYCSLCQMQPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKNLNSLQVVGVVGFMNRRLDLPEGLDPHVASIINDCWQSDPEQRPSFEELVQRMMLILNRVTTLSLKRIAES	629

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vivi2g03821	629	NCBIfam	PAS domain S-box protein	76	167	IPR000014	-
Vivi2g03821	629	ProSiteProfiles	Protein kinase domain profile.	350	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vivi2g03821	629	MobiDBLite	consensus disorder prediction	312	336	-	-
Vivi2g03821	629	FunFam	Serine/threonine-protein kinase isoform 1	341	428	-	-
Vivi2g03821	629	MobiDBLite	consensus disorder prediction	223	239	-	-
Vivi2g03821	629	Pfam	PAS domain	76	167	IPR000014	-
Vivi2g03821	629	SUPERFAMILY	Protein kinase-like (PK-like)	340	620	IPR011009	-
Vivi2g03821	629	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
Vivi2g03821	629	MobiDBLite	consensus disorder prediction	221	264	-	-
Vivi2g03821	629	Gene3D	Phosphorylase Kinase; domain 1	343	427	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g03821	Vivi-Chr2	149846598	149850367	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g03821	343	617	MAP Kinase Kinase Kinase	AT4G23050	69.091	1.49e-137	417

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Vivi2g03821		PK_Tyr_Ser-Thr	4.5e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g03821	-		-	vvo:131647034	1240.33

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