Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03820 ATGGAGAGACAAAATATTGCGTATCAAATTCTGGTTGATCGGTGTCGGAGCTTGGAGGAGAAACAAGTGAAATTAACGGAGCAGTTCAATGAGTTGATGCAGGAGAAGGTCAAAGACGATGAAGATTATTCAGCCGCTGGTTTCTTTTCCGGTTTCTTCTTCTCTATAAGTCCATATGCTAATGTTTTGAAATGCATGGGACATGCCGTTCATATCCATAGAGTTTCCTCCGGCGAGATCATATACTGGAATGATTCGGCAGAAACTCTATATGGATGGAGGGAGAATGAGATAATTGGACAAAGAGTAGCGGATTTCCTAGTTGCTGAGGAATATTACGCATCTCTACGAAAAATTCTACAACACTTGATCACAGGAGTGCCGTGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAATATTTATGGCAATGGTAACAAAAACTCCTTTTTACGAAGGCGGCGAGCTTGTTGGTGTCATCACTGTTTCTAGTGATGCATCTGTATTTAACTCTAAGGGTTTCGAAGAACGAAGAACTTGCCAATCTCGTGTGAAGGACCAACCGGGAATTCAAAGGTTAAAAAGGATTCAGTGGCCTCCACGTCCACAAATTGCATCATCTGTTCCTAATGTGGCAGCTAGAGTCCTTGCTAAGCTTCGAAGTGGGAGAGGTGGAGAACAAAGGAAGGATACTAGAAGTATTAAAGATAATTGCACAACTGATGATAATTCAGGAAGTAATAGAATGAATAATGGAAATGATTTATCTGGAAGTTCAGTTGAATTAACCATGCACCAGGATATTTCTAATGGAGAAGATAAAGAAGGAAATCTCCAAAAATGTAATTCTTTATTTGATGTAAATATAACAGATCCAAAAATTTCTGCACATGGAACTTCTAGTGATCTCAGAGATAGTTCAGCTAAACCATTCTCAAAGGACTGTTGTGAATGTTCTGGTTCTCCCTATCCCGAAGACCCTTTGTTAAGATTACGCTGTCCGTTCAATCCAAAGAAATTGGAGCCAGAAGCAATGAATAAGGATGAAGTGCAAAAGCAACAAGAAGGGTTGCCGTTGGCGAGCTCGAAGGAGAGTATTGGTGACAATCCGAGTTCATCAAGCAAAGAGAAAGGTGAATCAAACTCTATTGTAGAGTGTGATATCCATTGGGAAGACCTTCAATTAAGAAAAGAGATTGGGCAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGCGTCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATATGCTGAGGAGACTTTAAGAGACTACAAAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATCTATTCTCAGGAAAGGCATGCCATTGTGACAGAGTTGTTACCTAGAGGAAGCCTTTTCAGAACACTTCACAAGAACAATCAAACATTTGACATCAGAAGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATAGTGCATAGAGACCTAAAATCTTCCAACCTGCTTGTTGATAAAAACTGGAATGTCAAGGTTGGAGACTTTGGCTTGTCGAAGTTGAAGGAAGCAACTTTATTGACTACCAAATCCGGAAGAGGAACCTTTTATTGTTCTCTCTGTCAAATGCAGCCTCAATGGATGGCCCCTGAAGTTCTCCGCAGTGAACCTTCAAATGAAAAGTCCGATGTGTTCAGCTATGGCGTCGTCCTATGGGAAATAATGACTCAATCTATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTAGTAGGCTTTATGAATAGAAGACTGGACCTACCGGAGGGGCTGGATCCCCATGTAGCTTCAATCATAAATGACTGCTGGCAAAGTGATCCAGAACAACGACCATCATTTGAAGAGCTAGTGCAGAGAATGATGTTGATTCTCAACAGAGTAACAACTTTGTCATTGAAGAGAATTGCAGAATCCTGA 2025 0.4054 MERQNIAYQILVDRCRSLEEKQVKLTEQFNELMQEKVKDDEDYSAAGFFSGFFFSISPYANVLKCMGHAVHIHRVSSGEIIYWNDSAETLYGWRENEIIGQRVADFLVAEEYYASLRKILQHLITGVPWSGQFPFKKRSGEIFMAMVTKTPFYEGGELVGVITVSSDASVFNSKGFEERRTCQSRVKDQPGIQRLKRIQWPPRPQIASSVPNVAARVLAKLRSGRGGEQRKDTRSIKDNCTTDDNSGSNRMNNGNDLSGSSVELTMHQDISNGEDKEGNLQKCNSLFDVNITDPKISAHGTSSDLRDSSAKPFSKDCCECSGSPYPEDPLLRLRCPFNPKKLEPEAMNKDEVQKQQEGLPLASSKESIGDNPSSSSKEKGESNSIVECDIHWEDLQLRKEIGQGSYAVVYHGIWNASDVAVKVYFGNGYAEETLRDYKKEVDIMKRLRHPNVLLFMGAIYSQERHAIVTELLPRGSLFRTLHKNNQTFDIRRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKEATLLTTKSGRGTFYCSLCQMQPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKNLNSLQVVGVVGFMNRRLDLPEGLDPHVASIINDCWQSDPEQRPSFEELVQRMMLILNRVTTLSLKRIAES 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03820 674 MobiDBLite consensus disorder prediction 240 260 - -
Vivi2g03820 674 Pfam Protein tyrosine and serine/threonine kinase 395 655 IPR001245 GO:0004672|GO:0006468
Vivi2g03820 674 MobiDBLite consensus disorder prediction 357 381 - -
Vivi2g03820 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Vivi2g03820 674 SUPERFAMILY Protein kinase-like (PK-like) 385 665 IPR011009 -
Vivi2g03820 674 MobiDBLite consensus disorder prediction 223 239 - -
Vivi2g03820 674 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Vivi2g03820 674 FunFam Serine/threonine-protein kinase isoform 1 386 473 - -
Vivi2g03820 674 Pfam PAS domain 76 167 IPR000014 -
Vivi2g03820 674 Coils Coil 1 35 - -
Vivi2g03820 674 PRINTS Tyrosine kinase catalytic domain signature 627 649 IPR001245 GO:0004672|GO:0006468
Vivi2g03820 674 PRINTS Tyrosine kinase catalytic domain signature 469 482 IPR001245 GO:0004672|GO:0006468
Vivi2g03820 674 PRINTS Tyrosine kinase catalytic domain signature 583 605 IPR001245 GO:0004672|GO:0006468
Vivi2g03820 674 PRINTS Tyrosine kinase catalytic domain signature 508 526 IPR001245 GO:0004672|GO:0006468
Vivi2g03820 674 ProSiteProfiles Protein kinase domain profile. 395 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03820 674 MobiDBLite consensus disorder prediction 345 382 - -
Vivi2g03820 674 CDD PAS 78 167 IPR000014 -
Vivi2g03820 674 FunFam PAS domain-containing protein tyrosine kinase family protein 473 672 - -
Vivi2g03820 674 MobiDBLite consensus disorder prediction 221 260 - -
Vivi2g03820 674 Gene3D Transferase(Phosphotransferase) domain 1 473 671 - -
Vivi2g03820 674 Gene3D Phosphorylase Kinase; domain 1 388 472 - -
Vivi2g03820 674 SMART pas_2 57 125 IPR000014 -
Vivi2g03820 674 ProSiteProfiles PAS repeat profile. 77 127 IPR000014 -
Vivi2g03820 674 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 167 IPR035965 -
Vivi2g03820 674 NCBIfam PAS domain S-box protein 76 167 IPR000014 -
Vivi2g03820 674 Gene3D PAS domain 75 171 - -
Vivi2g03820 674 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 260 657 - -
Vivi2g03820 674 CDD STKc_MAP3K-like 401 656 - -
Vivi2g03820 674 SMART serkin_6 395 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03820 Vivi-Chr2 149846597 149850367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03820 388 662 MAP Kinase Kinase Kinase AT4G23050 69.091 3.41e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi2g03820 PK_Tyr_Ser-Thr 5.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03820 - - vvo:131647034 1357.81