Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03819 ATGGAGAGACAAAATATTGCGTATCAAATTCTGGTTGATCGGTGTCGGAGCTTGGAGGAGAAACAAGTGAAATTAACGGAGCAGTTCAATGAGTTGATGCAGGAGAAGGTCAAAGACGATGAAGATTATTCAGCCGCTGGTTTCTTTTCCGGTTTCTTCTTCTCTATAAGTCCATATGCTAATGTTTTGAAATGCATGGGACATGCCGTTCATATCCATAGAGTTTCCTCCGGCGAGATCATATACTGGAATGATTCGGCAGAAACTCTATATGGATGGAGGGAGAATGAGATAATTGGACAAAGAGTAGCGGATTTCCTAGTTGCTGAGGAATATTACGCATCTCTACGAAAAATTCTACAACACTTGATCACAGGAGTGCCGTGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAATATTTATGGCAATGGTAACAAAAACTCCTTTTTACGAAGGCGGCGAGCTTGTTGGTGTCATCACTGTTTCTAGTGATGCATCTGTATTTAACTCTAAGGGTTTCGAAGAACGAAGAACTTGCCAATCTCGTGTGAAGGACCAACCGGGAATTCAAAGGTTAAAAAGGATTCAGTGGCCTCCACGTCCACAAATTGCATCATCTGTTCCTAATGTGGCAGCTAGAGTCCTTGCTAAGCTTCGAAGTGGGAGAGGTGGAGAACAAAGGAAGGATACTAGAAGTATTAAAGATAATTGCACAACTGATGATAATTCAGGAAGTAATAGAATGAATAATGGAAATGATTTATCTGGAAGTTCAGTTGAATTAACCATGCACCAGGATATTTCTAATGGAGAAGATAAAGAAGGAAATCTCCAAAAATGTAATTCTTTATTTGATGTAAATATAACAGATCCAAAAATTTCTGCACATGGAACTTCTAGTGATCTCAGAGATAGTTCAGCTAAACCATTCTCAAAGGACTGTTGTGAATGTTCTGGTTCTCCCTATCCCGAAGACCCTTTGTTAAGATTACGCTGTCCGTTCAATCCAAAGAAATTGGAGCCAGAAGCAATGAATAAGGATGAAGTGCAAAAGCAACAAGAAGGGTTGCCGTTGGCGAGCTCGAAGGAGAGTATTGGTGACAATCCGAGTTCATCAAGCAAAGAGAAAGGTGAATCAAACTCTATTGTAGAGTGTGATATCCATTGGGAAGACCTTCAATTAAGAAAAGAGATTGGGCAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGCGTCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATATGCTGAGGAGACTTTAAGAGACTACAAAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAATCTATTCTCAGGAAAGGCATGCCATTGTGACAGAGTTGTTACCTAGAGGAAGCCTTTTCAGAACACTTCACAAGAACAATCAAACATTTGACATCAGAAGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATAGTGCATAGAGACCTAAAATCTTCCAACCTGCTTGTTGATAAAAACTGGAATGTCAAGGTTGGAGACTTTGGCTTGTCGAAGTTGAAGGAAGCAACTTTATTGACTACCAAATCCGGAAGAGGAACCCCTCAATGGATGGCCCCTGAAGTTCTCCGCAGTGAACCTTCAAATGAAAAGTAA 1722 0.4036 MERQNIAYQILVDRCRSLEEKQVKLTEQFNELMQEKVKDDEDYSAAGFFSGFFFSISPYANVLKCMGHAVHIHRVSSGEIIYWNDSAETLYGWRENEIIGQRVADFLVAEEYYASLRKILQHLITGVPWSGQFPFKKRSGEIFMAMVTKTPFYEGGELVGVITVSSDASVFNSKGFEERRTCQSRVKDQPGIQRLKRIQWPPRPQIASSVPNVAARVLAKLRSGRGGEQRKDTRSIKDNCTTDDNSGSNRMNNGNDLSGSSVELTMHQDISNGEDKEGNLQKCNSLFDVNITDPKISAHGTSSDLRDSSAKPFSKDCCECSGSPYPEDPLLRLRCPFNPKKLEPEAMNKDEVQKQQEGLPLASSKESIGDNPSSSSKEKGESNSIVECDIHWEDLQLRKEIGQGSYAVVYHGIWNASDVAVKVYFGNGYAEETLRDYKKEVDIMKRLRHPNVLLFMGAIYSQERHAIVTELLPRGSLFRTLHKNNQTFDIRRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKEATLLTTKSGRGTPQWMAPEVLRSEPSNEK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03819 573 Gene3D Phosphorylase Kinase; domain 1 388 472 - -
Vivi2g03819 573 MobiDBLite consensus disorder prediction 240 260 - -
Vivi2g03819 573 FunFam Serine/threonine-protein kinase isoform 1 386 473 - -
Vivi2g03819 573 SUPERFAMILY Protein kinase-like (PK-like) 380 568 IPR011009 -
Vivi2g03819 573 MobiDBLite consensus disorder prediction 357 381 - -
Vivi2g03819 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Vivi2g03819 573 MobiDBLite consensus disorder prediction 223 239 - -
Vivi2g03819 573 ProSitePatterns Protein kinases ATP-binding region signature. 401 422 IPR017441 GO:0005524
Vivi2g03819 573 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 260 569 - -
Vivi2g03819 573 Gene3D Transferase(Phosphotransferase) domain 1 473 573 - -
Vivi2g03819 573 Coils Coil 1 35 - -
Vivi2g03819 573 MobiDBLite consensus disorder prediction 345 382 - -
Vivi2g03819 573 CDD PAS 78 167 IPR000014 -
Vivi2g03819 573 Gene3D PAS domain 75 171 - -
Vivi2g03819 573 MobiDBLite consensus disorder prediction 221 260 - -
Vivi2g03819 573 Pfam Protein tyrosine and serine/threonine kinase 395 568 IPR001245 GO:0004672|GO:0006468
Vivi2g03819 573 SMART pas_2 57 125 IPR000014 -
Vivi2g03819 573 ProSiteProfiles PAS repeat profile. 77 127 IPR000014 -
Vivi2g03819 573 ProSiteProfiles Protein kinase domain profile. 395 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03819 573 Pfam PAS domain 76 167 IPR000014 -
Vivi2g03819 573 CDD STKc_MAP3K-like 401 573 - -
Vivi2g03819 573 NCBIfam PAS domain S-box protein 76 167 IPR000014 -
Vivi2g03819 573 SMART serkin_6 395 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03819 573 SUPERFAMILY PYP-like sensor domain (PAS domain) 61 167 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03819 Vivi-Chr2 149846593 149849397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03819 388 573 MAP Kinase Kinase Kinase AT4G23050 73.118 4.01e-93 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi2g03819 PK_Tyr_Ser-Thr 9.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03819 - - vvo:131647034 1145.95