Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03812 ATGAATATTTTTGAGTCATACAACCACTCAGATACATCTTCTTCCTCAGAAACAAGCTCCTCAAACCGTAATAACTCAGAAACGTTTTTGGCATCTGAGAGACCAAAGAAGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGACACCCTGTGTACCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACAGTAACAAATGCAGCAAGTCGAGGATTTGGCTTGGAACATATCCAACGCCTGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCTGCATGGCGGTTGAGGTTGCCGGAGTCCAATGATGCAGACGAGATAAGGAAAGCTGCGATAGAAGCTGCTGAGTTGTTTGCTGTTGATCAGGACAACAACCAGTGTGAGGTTAGTGTTGGTGATGGAGTGGATATAGAACAAGTTCCAACGGAATTCGACGACATGCATGATTTGCTTTTGAGAATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATTATGCCACTAACTGGGGTGACATGGAGATATTTGACACTCAAATTTCATCATTATGGAATTTCGAAACACAATATTAA 648 0.429 MNIFESYNHSDTSSSSETSSSNRNNSETFLASERPKKRTGRRVFKETRHPVYRGVRKRNNNKWVCEMRVPNSNKCSKSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDADEIRKAAIEAAELFAVDQDNNQCEVSVGDGVDIEQVPTEFDDMHDLLLRIANEPLRSPSPSITDYATNWGDMEIFDTQISSLWNFETQY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03812 215 Gene3D AP2/ERF domain 51 113 IPR036955 GO:0003700|GO:0006355
Vivi2g03812 215 ProSiteProfiles AP2/ERF domain profile. 51 112 IPR001471 GO:0003700|GO:0006355
Vivi2g03812 215 SMART rav1_2 51 118 IPR001471 GO:0003700|GO:0006355
Vivi2g03812 215 Pfam AP2 domain 50 104 IPR001471 GO:0003700|GO:0006355
Vivi2g03812 215 SUPERFAMILY DNA-binding domain 51 114 IPR016177 GO:0003677
Vivi2g03812 215 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Vivi2g03812 215 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Vivi2g03812 215 MobiDBLite consensus disorder prediction 1 29 - -
Vivi2g03812 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 210 IPR045277 GO:0003700
Vivi2g03812 215 MobiDBLite consensus disorder prediction 1 41 - -
Vivi2g03812 215 CDD AP2 52 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03812 Vivi-Chr2 149584410 149585323 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03812 24 211 AP2-EREBP Transcription Factor Family AT1G12610 48.095 8.44e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03812 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03812 - - psat:127120702 333.954