Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03810 ATGAATATTTTTGAATCATCGTTTACCGAGTTGAACTACGGCACACACCAGCACTCTGATACATCTTCTTCGTCAGAAACAAGTTCCTCAAACCATAATAATTCAGAAACGTTTTTGGCATCTGAGAGACCAAAGAAGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGACACCCTATGTACCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACCGTAACAAATGCAGCAAGTCAAGGATTTGGCTTGGAACATATGCTACACCAGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGGAAATCATCAGCTTGTCTTAATTTTGCTGATTCGGCGTGGCGGTTGAGGTTGCCGGAGTCCAATGATGCAGAGGAGATAAGGAAAGCTGCCATAGAAGCGGCTGAGTTGTTTGCTGTTGATCAGGACAACAACCAGTGTGAGGTTAGTGTTGGTGATGGAGTGGTCATTGAACAAGTTCCAACGGAATTCGACGACATGCATGATTTACTTATGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCTATCACAGATTATGTTGCTAACTGGTTTGACATTGAGATATTTGACACTCAAATTTCATCATTATGGAATTTCGAAACACAATATTAA 678 0.4218 MNIFESSFTELNYGTHQHSDTSSSSETSSSNHNNSETFLASERPKKRTGRRVFKETRHPMYRGVRKRNNNKWVCEMRVPNRNKCSKSRIWLGTYATPEMAARAHDVAALVLKGKSSACLNFADSAWRLRLPESNDAEEIRKAAIEAAELFAVDQDNNQCEVSVGDGVVIEQVPTEFDDMHDLLMSIANEPLRSPSPSITDYVANWFDIEIFDTQISSLWNFETQY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03810 225 SMART rav1_2 60 128 IPR001471 GO:0003700|GO:0006355
Vivi2g03810 225 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g03810 225 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi2g03810 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 220 IPR045277 GO:0003700
Vivi2g03810 225 MobiDBLite consensus disorder prediction 1 38 - -
Vivi2g03810 225 Pfam AP2 domain 60 113 IPR001471 GO:0003700|GO:0006355
Vivi2g03810 225 CDD AP2 61 124 IPR001471 GO:0003700|GO:0006355
Vivi2g03810 225 Gene3D AP2/ERF domain 60 123 IPR036955 GO:0003700|GO:0006355
Vivi2g03810 225 SUPERFAMILY DNA-binding domain 60 123 IPR016177 GO:0003677
Vivi2g03810 225 MobiDBLite consensus disorder prediction 1 51 - -
Vivi2g03810 225 ProSiteProfiles AP2/ERF domain profile. 60 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03810 Vivi-Chr2 149558635 149559600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03810 34 221 AP2-EREBP Transcription Factor Family AT1G63030 45.833 1.36e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03810 AP2 8.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03810 - - psat:127120702 342.813