Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03809 ATGAATATTTTTGAATCACACCACCACTCAGATACATCTTCTTCGTCGGAAACAAGCTCCTCAAACCGTAATAATACAGAAACGTTTTTGCCAGAAAGACCCAAGAAGCGAACAGGTAGAAGAGTACTCAAGGAGACAAGACACCCTGTGTATCGCGGAATACGAAAGAGAAACAATAACAAGTGGGTTTCTGAAATGCGAGTTCCTAACCGTAACAAATGCAGCAAGTCAAGGATTTGGCTTGGAACATATGCTACACCAGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCTGCATGGCGGTTGAGGCTGCCGGAGTCCAATGATGCAGACGAGATAAGGAAAGCTGCAATGGAAGCTGCTGAGCTAGTTTATGTTGAAGACAACAACCAGTGTGAGGTTAGTGTTGGTGATGGAGTGGTCATGGAAGATTCCAATGATAAGCACGACATGATCGAACAAGTTCCGACGGAATTCGACGACATGCATGATTTGCTTTTGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATTATGCCACTAACTGGTTTGACATGGAGATGTTTGACACTCAAGTCTCATCATTGTGGGACTTCTCGGATGTACGTAATTAG 675 0.4385 MNIFESHHHSDTSSSSETSSSNRNNTETFLPERPKKRTGRRVLKETRHPVYRGIRKRNNNKWVSEMRVPNRNKCSKSRIWLGTYATPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDADEIRKAAMEAAELVYVEDNNQCEVSVGDGVVMEDSNDKHDMIEQVPTEFDDMHDLLLSIANEPLRSPSPSITDYATNWFDMEMFDTQVSSLWDFSDVRN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03809 224 Pfam AP2 domain 49 103 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 218 IPR045277 GO:0003700
Vivi2g03809 224 CDD AP2 51 113 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 MobiDBLite consensus disorder prediction 29 43 - -
Vivi2g03809 224 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 MobiDBLite consensus disorder prediction 1 43 - -
Vivi2g03809 224 Gene3D AP2/ERF domain 50 112 IPR036955 GO:0003700|GO:0006355
Vivi2g03809 224 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g03809 224 ProSiteProfiles AP2/ERF domain profile. 50 111 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 SMART rav1_2 50 117 IPR001471 GO:0003700|GO:0006355
Vivi2g03809 224 SUPERFAMILY DNA-binding domain 50 113 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03809 Vivi-Chr2 149549133 149550012 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03809 24 219 AP2-EREBP Transcription Factor Family AT1G12610 45.714 7.31e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03809 AP2 7.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03809 - - psat:127120702 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03809 2 149549133 149550012 Vivi2g03809 2 149549133 149550012 ECH
Vivi1g02330 1 49116005 49116970 Vivi2g03809 2 149549133 149550012 PCT