Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03806 ATGAATATTTTTGAATCATCGTTTACCGAGTTCAACTACGGCACACACCAGCACTCTGATACATCTTCTTCGTCAGAAACAAGCTCCTCAAACCATAATAATGCAGAAACGTTTTTGGCATCTGAGAGACCTAAGAAGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGACACCCTGTGTATCGAGGAATACGAAAGCGGAACAATAACAAGTGGGTTTCTGAAATGCGAGTTCCTAACAGTAACAAATGCAGTAAGTCAAGGATTTGGCTTGGAACATATCCTACACCAGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCCGACTCGGCATGGCGGTTGAGGTTGCCGGAGTCAAATGATGCGGAGGAGATAAGGAAAGCTGCAATGGAAGCTGCTGAGTTGTTTGCTGTTGAGGACAACAGTGATGGAGGGGCCATTGAAGATTCCAATGATAAGCATGTTATGACGGAAATGGAAGACATGCATGATTTGCTTTTGAGAATTGCAAATGAGCCATTACGTTCTCCTTCTCCATCTATCACAGATTATGCTACTAACTGGGGTGATATGGAGATATTCGACACTCAAGTTTCATCATTGTGGAACTTTTCTATTTGA 660 0.4288 MNIFESSFTEFNYGTHQHSDTSSSSETSSSNHNNAETFLASERPKKRTGRRVFKETRHPVYRGIRKRNNNKWVSEMRVPNSNKCSKSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDAEEIRKAAMEAAELFAVEDNSDGGAIEDSNDKHVMTEMEDMHDLLLRIANEPLRSPSPSITDYATNWGDMEIFDTQVSSLWNFSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03806 219 Gene3D AP2/ERF domain 60 122 IPR036955 GO:0003700|GO:0006355
Vivi2g03806 219 MobiDBLite consensus disorder prediction 14 38 - -
Vivi2g03806 219 CDD AP2 61 123 IPR001471 GO:0003700|GO:0006355
Vivi2g03806 219 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vivi2g03806 219 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vivi2g03806 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 216 IPR045277 GO:0003700
Vivi2g03806 219 MobiDBLite consensus disorder prediction 14 50 - -
Vivi2g03806 219 SUPERFAMILY DNA-binding domain 60 123 IPR016177 GO:0003677
Vivi2g03806 219 ProSiteProfiles AP2/ERF domain profile. 60 121 IPR001471 GO:0003700|GO:0006355
Vivi2g03806 219 SMART rav1_2 60 127 IPR001471 GO:0003700|GO:0006355
Vivi2g03806 219 Pfam AP2 domain 59 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03806 Vivi-Chr2 149493389 149494198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03806 33 217 AP2-EREBP Transcription Factor Family AT1G12610 46.667 9.65e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03806 AP2 8.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03806 - - psat:127120702 343.584