Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03797 ATGCAAGAACCAAGCTTAGGCATGATGCAAGGTGGTGGTGGTTACGGTGGAGACGGTGGTGACAACAACCGACAACTCAAGGCGGAGATAGCAACACATCCTTTATATGAACAGCTTCTGTCTGCACATGTGGCTTGTCTTCGGGTTGCAACTCCTATAGATCAGTTACCATTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGGTCTTATATCTCTCAACAAACTCATTCTCTTTCACCGCATGATCGTCAACAACTTGACAACTTCCTCGCGCAATATTTGATAGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTTAGAGTTCATGCTGTTGAGGCTGTTATGGCTTGCCGTGATATTGAAAATACCTTACAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAAGCGGCGCAACAATGTCAGACGATGAAGATGAACAATTGCAGATGGATTATTGTTTAGATAATCAATCTAGTGGCGGCGGTGGAGGCGATCATGACATGATGGGACTTGGTCCATTACTTCCTACTGAATCTGAAAGGTCACTCATGGAAAGAGTTCGCCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTAAGAGAGGAAATATTAAGGAAAAGAAGAGCTGGAAAACTACCAGGTGACACAACTTCTGTTTTGAAGAGTTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGATGACAAAGCAAAACTAGTGGAGGAAACAGGATTGCAACTGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAAAGAAATTGGCATAGCAATTCTCAATCTGTTACCTCTTTGAAATCCAAACGCAAGAGGTAG 879 0.4198 MQEPSLGMMQGGGGYGGDGGDNNRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQMDYCLDNQSSGGGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKSWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03797 292 ProSiteProfiles 'Homeobox' domain profile. 215 278 IPR001356 GO:0003677
Vivi2g03797 292 Pfam KNOX1 domain 26 67 IPR005540 GO:0003677|GO:0005634
Vivi2g03797 292 CDD homeodomain 218 279 IPR001356 GO:0003677
Vivi2g03797 292 Gene3D - 214 288 - -
Vivi2g03797 292 SMART KNOX1_2 24 68 IPR005540 GO:0003677|GO:0005634
Vivi2g03797 292 SUPERFAMILY Homeodomain-like 217 282 IPR009057 -
Vivi2g03797 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 71 279 - -
Vivi2g03797 292 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g03797 292 SMART HOX_1 217 282 IPR001356 GO:0003677
Vivi2g03797 292 FunFam homeobox protein knotted-1-like 3 isoform X1 216 277 - -
Vivi2g03797 292 Pfam KNOX2 domain 82 133 IPR005541 GO:0003677|GO:0005634
Vivi2g03797 292 Pfam Homeobox KN domain 235 274 IPR008422 GO:0003677|GO:0006355
Vivi2g03797 292 SMART KNOX2_2 79 134 IPR005541 GO:0003677|GO:0005634
Vivi2g03797 292 ProSiteProfiles ELK domain profile. 195 215 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03797 Vivi-Chr2 149329640 149333422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03797 1 291 Homeobox Transcription Factor Family AT1G62990 78.716 2.37e-169 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi2g03797 KNOX2 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03797 - - tpra:123907403 533.872