Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03780 ATGAGAATACACTGTCATATTCATCTTTCTCATGCTCTATTATGCTTCATTCTATGTTTGTTTTGGTCTATTGTTACTGTTTCAACAGAAACTGAGAAGGAGATTTTACTTCAGTTCAAGGGTAACATCACAGAAGATCCATACAATACCTTGACTTCATGGGTTTCTAGTGGAGACCCTTGTCAAGGTTATAAAGGTATTTTCTGTAACTTGGAAGGTTTTGTTGAAAGAATTGTGCTTTGGAACACTAGCTTGGGAGGGGTGTTGTCTCCATCACTCTCTGGATTGAAGAGGTTGAGGATATTGACATTGTTTGGGAATCGATTTTCGGGTAATATCCCCGGTGAATATGCTGATCTTCATTCATTGTGGAAGATCAATGTTAGCTCCAATGCGTTATCCGGTTCGATCCCGGATTTTATCGGCGATTTGCCTAACATTCGATTTCTAGACTTATCGAAGAATGGCTTCATTGGGGAGATACCTTCTGCTTTGTTTAGGTACTGCTATAAAACCAAGTTTGTTTCTCTTTCTCATAATAATCTTGTTGGTTCAATTCCTTTATCCTTGGTGAATTGTGCAAACCTTGAAGGTTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTTCCTTCTAGACTCTGTGATATTCCTATGTTATCATATGTATCTCTGAGAAGCAATGCGTTATCGGGTAGTGTGAAGGATCACATTTCTTCGTGCCGAAGTTTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATTTGGCTCCATTCAGCATCCTTGGAATGCAAAATCTTACTTACTTCAATATATCATATAACGGGTTTGAAGGACGAATTCCTGATATCACTTCGTGTAGTGAGAGATTAGAGATCTTTGATGCTTCGGCGAATAATTTGGATGGGGTGATTCCGTCCGGCATAACTAGATGCAAGAACTTAAAACTCTTGTCATTGGAGTTGAATAGGCTGAAAGGGAGTATCCCGGTTGATATTCCAGAATTGCGAGAACTATTGGTTATTAAATTGGGTAATAACTCGATAGACGGAACGATTCCCGAGGGGTTTGGCAACATTGAACTGCTTGAATTGTTGGATTTGAGCAACCTAAACCTTGTTGGTGAAATTCCGGTCGATATAACAAATTGCAAGTTTCTTCTTGAGCTGGACGTTTCTGGTAATAACTTAGACGGCGAGATTCCACAGGCCGCTTACAAAATGACGAATCTGGAAGCCCTTGACCTCCATTATAACAATCTTAAGGGAAGCATCCCGGCGAGCCTAGGAAACCTATCAAGGATCGAATACCTAGATCTATCGCATAATTCACTTTCTGGTTCAATCCCTACTTCCCTTGGAGATTTAAACAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTAATACTGCAACCATACAGAATTTTGGTGCACCTGCATTTTCCAATAATCCTTTTCTCTGTGGTGCTCCGTTAGACACCCGTTGCTCAGCAAACGGAACTGGATCATCGCCTTTAGCTTCCAGGAAAACTAAACTTCTCAGTGTCTCTGCAATTATTGCTATTGTAGCTGCAGCTGTAATTCTTACCGGGGTTTGTTTGGTGACCATCATGAATATTAGGGCCCGACGTAGAAAAAAAGACGATGATGAGGTTATGATTGTTGAGAGTACGCCTCTAACATCATCAGAATCAAGTGTTATTATTGGAAAGCTTGTTCTCTTCAGCAAAAGTTTACCATCAAAATACGAAGATTGGGAGGCAGGCACCAAAGCATTGCTTGACAAAGAGTCTTTGATTGGCGGCGGATCGATTGGTACGGTCTACAAAACCGATTTCGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTAGGAAGAATCGGAAATCAAGAGGAATTCGAACATGAAATCGGGCGACTAGGAAACCTTCAGCACCATAATTTAGTTGCTTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAACGGGAATCTCTATGATAATCTACACGGTCTTGGCTATCCTGGAACCAGCACAAGTAGAGGCAATAGGGAACTAGATTGGCCGAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCTCTTGCTTATCTTCACCACGACTGTCGTCCTCCAATCCTTCACCTCAACCTTAAATCCTCTAACATACTCTTAGATGACAAGTACGAAGCCAAGTTATCTGATTATGGATTAGGTAAGTTGCTACCGATTTTGGATAACTACGTTCTGACCAAGTTCCACAATGCTGTTGGTTATGTTGCACCAGAGTTGGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTCGGCGTCATTCTTTTGGAGCTAGTTACGGGGAGGAAGCCTGTAGAAAGTCCAACCACAAATGAGGTTGTGGTTTTGTGTGAATACGTGCGAGGTTTGCTGGAGACTGGCTCGGTTTCAAATTGTTTTGACAGAAATTTACTGGGATTTGCAGAGAATGAAATGATTCAGGTTATGAAATTGGGGCTAATTTGTACTTCAGAGGATCCTTTAAGAAGACCAAGCATGGCTGAAGTTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCGTTAA 2670 0.4082 MRIHCHIHLSHALLCFILCLFWSIVTVSTETEKEILLQFKGNITEDPYNTLTSWVSSGDPCQGYKGIFCNLEGFVERIVLWNTSLGGVLSPSLSGLKRLRILTLFGNRFSGNIPGEYADLHSLWKINVSSNALSGSIPDFIGDLPNIRFLDLSKNGFIGEIPSALFRYCYKTKFVSLSHNNLVGSIPLSLVNCANLEGFDFSFNNLSGVVPSRLCDIPMLSYVSLRSNALSGSVKDHISSCRSLMHLDFGSNRFTDLAPFSILGMQNLTYFNISYNGFEGRIPDITSCSERLEIFDASANNLDGVIPSGITRCKNLKLLSLELNRLKGSIPVDIPELRELLVIKLGNNSIDGTIPEGFGNIELLELLDLSNLNLVGEIPVDITNCKFLLELDVSGNNLDGEIPQAAYKMTNLEALDLHYNNLKGSIPASLGNLSRIEYLDLSHNSLSGSIPTSLGDLNNLTHFDLSFNNLSGVIPNTATIQNFGAPAFSNNPFLCGAPLDTRCSANGTGSSPLASRKTKLLSVSAIIAIVAAAVILTGVCLVTIMNIRARRRKKDDDEVMIVESTPLTSSESSVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIGNQEEFEHEIGRLGNLQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLGYPGTSTSRGNRELDWPRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDYGLGKLLPILDNYVLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETGSVSNCFDRNLLGFAENEMIQVMKLGLICTSEDPLRRPSMAEVVQVLESIRNGLESR 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03780 889 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi2g03780 889 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 168 506 - -
Vivi2g03780 889 Gene3D Ribonuclease Inhibitor 28 177 IPR032675 -
Vivi2g03780 889 Gene3D Ribonuclease Inhibitor 178 510 IPR032675 -
Vivi2g03780 889 SMART LRR_typ_2 457 480 IPR003591 -
Vivi2g03780 889 SMART LRR_typ_2 409 433 IPR003591 -
Vivi2g03780 889 SMART LRR_typ_2 337 360 IPR003591 -
Vivi2g03780 889 SMART LRR_typ_2 144 168 IPR003591 -
Vivi2g03780 889 Pfam Protein kinase domain 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03780 889 Pfam Leucine Rich Repeat 459 477 IPR001611 GO:0005515
Vivi2g03780 889 Gene3D Phosphorylase Kinase; domain 1 569 677 - -
Vivi2g03780 889 Gene3D Transferase(Phosphotransferase) domain 1 678 888 - -
Vivi2g03780 889 PANTHER OS05G0588300 PROTEIN 211 334 - -
Vivi2g03780 889 SUPERFAMILY L domain-like 167 498 - -
Vivi2g03780 889 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 29 167 - -
Vivi2g03780 889 SUPERFAMILY L domain-like 76 211 - -
Vivi2g03780 889 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 678 888 - -
Vivi2g03780 889 ProSiteProfiles Protein kinase domain profile. 601 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03780 889 Pfam Leucine rich repeat 390 446 IPR001611 GO:0005515
Vivi2g03780 889 SUPERFAMILY Protein kinase-like (PK-like) 602 880 IPR011009 -
Vivi2g03780 889 FunFam Putative LRR receptor-like serine/threonine-protein kinase 578 677 - -
Vivi2g03780 889 CDD STKc_IRAK 607 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03780 Vivi-Chr2 149034967 149038809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03780 13 888 Receptor kinase-like Gene Family AT1G62950 64.798 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vivi2g03780 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03780 - - mtr:11437247 1547.72