Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03742 ATGAGTTTCTTCCATCTTCTCCTTTCTATGTTTCTCTTGATTTCACTTTTAACTCTACAAACTGTTTGTGGAAATGCTGAGCTGAGGGCTTTGATGGACTTGAAATTCTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGAAGGGATTGCTTGTAATGATCATTGGAAAGTGGCTAATATTTCTTTGCAGGGAAAGGGTCTTTCTGGTTCATTATCTCCGGTTGTTGCTGAACTGAAGTGCCTTTCAGGGTTATACTTGCATTACAATAATCTTTCTGGTGAGATACCATCACAGATTTCGAATCTCACTGAGCTTGTTGATCTTTATCTTGATGTTAATAGTCTATCTGGAACTATTCCTCCTGAGTTTGGCAACATGGCTAGTCTCCAAGTACTCCAGTTGGGAGATAATCAATTGGTTGGGAATATACCGACACAGATTGGTTTGTTGAAGCAACTTACTACTCTTGCTTTGCAACATAACAAGTTAAATGGTCAAATTCCCCTTAGCTTGGGGAACCTGGAGAAACTACGCAGGCTAAATTTGAGCTTCAACAACTTCAGTGGTACTATTCCAGCAACACTAGCCAATGCTGCTCATTTGGAAGTATTGGATATTCAAAACAATTTTCTATCAGGAATTGTTCCTTCTGCATTGAAGCGACTTGGGGAGGGATTCCAAGGGGCAAACAACCAAGGTTTATGCGGAGTTGGGCTTTCTACTTTGAGAGCTTGCAACCAGTATCCAGATTTAAATGTCAGCAACATTGATACCTCGGATCAAGACCACTTCAAAAATAATAACCTCGCCACGCCTCGCCCGGAGCCTGCAAATATCCCAGTGCATTGTAACCAGACACATTGCTCAAAATCAAGGTTTCCTCAAAGTGTCATCACAACAGCAAGTGCTATAATCATCACTCTTGTATTCATAGGAGCTGGATTGTTTACATTCGTCAAATACCGCCGTCGAAAGCAGAAGATTTCTTCGAACTATTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGATTTTTACAGAAAAAGCCCATCTACCCTTGTTAATCTTGACTATTATAATGGATGTTATCCTTTGCCCGATGATCAAAAAGCTGGTGGATTAGCCAATGAATATCTAAATAAATTCAGATTTAATGTAGATGAAGTCGAGTCTGCAACGCAATATCTTTCGGAGGCGAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAGTTCTCAGGGATGGTTCTTTCGTAGCTATTAGAAGCATTAACATGACATGTTGCAAAGCCGAGGAAGCCGAATTTGCAAAGGGATTGAGCTTATTAACCTCACTTAGACATGAAAACGTTGTCAAGCTGAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGTTACCTTATTTATGACTTTGCCACAATGGGCGACCTGTCCCAATATCTTGACATGGAAGATAGAAGTGGCCATTTGCTTGATTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAGCAAACCTACAATAGTACACCAGAATATCTCAGTAGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCTGGACTTCCCAAACTTCTCGCGGAAGACGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCGGAATACATTACTACCGGTCGCTTTACTGAGAAGAGTGACATATACGCATTTGGGGTTATTGTACTCCAAGTTTTGTCTGGCAAGACAGCGATAGGTGGTTCGATACGGACGGCGTTTGAGTCTCTCAGATTTGATGATTGCATTGACACAAATCTTAATGGAAGATATTCTAGTTCTGAAGCAATGATGCTGACAAAGCTTGGAGTACAGTGTGTCCATGAAAGCCCTGATGAAAGACCAAACATGGTGAATGTGATTCAGGAGCTAAGTGTGTTTCCGGCTCATTCAAAATGA 2049 0.4095 MSFFHLLLSMFLLISLLTLQTVCGNAELRALMDLKFSLDPEGKILTSWISDGNPCSGSFEGIACNDHWKVANISLQGKGLSGSLSPVVAELKCLSGLYLHYNNLSGEIPSQISNLTELVDLYLDVNSLSGTIPPEFGNMASLQVLQLGDNQLVGNIPTQIGLLKQLTTLALQHNKLNGQIPLSLGNLEKLRRLNLSFNNFSGTIPATLANAAHLEVLDIQNNFLSGIVPSALKRLGEGFQGANNQGLCGVGLSTLRACNQYPDLNVSNIDTSDQDHFKNNNLATPRPEPANIPVHCNQTHCSKSRFPQSVITTASAIIITLVFIGAGLFTFVKYRRRKQKISSNYSEGKLSPQQPKDFYRKSPSTLVNLDYYNGCYPLPDDQKAGGLANEYLNKFRFNVDEVESATQYLSEANLLCKSKFSAMYKGVLRDGSFVAIRSINMTCCKAEEAEFAKGLSLLTSLRHENVVKLRGFCCSSSRGECYLIYDFATMGDLSQYLDMEDRSGHLLDWSKRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDKEFNPLIMDAGLPKLLAEDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLNGRYSSSEAMMLTKLGVQCVHESPDERPNMVNVIQELSVFPAHSK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03742 682 SUPERFAMILY Protein kinase-like (PK-like) 390 675 IPR011009 -
Vivi2g03742 682 Gene3D Phosphorylase Kinase; domain 1 381 487 - -
Vivi2g03742 682 ProSiteProfiles Protein kinase domain profile. 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03742 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 66 675 - -
Vivi2g03742 682 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vivi2g03742 682 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Vivi2g03742 682 Gene3D Ribonuclease Inhibitor 21 296 IPR032675 -
Vivi2g03742 682 FunFam Protein NSP-INTERACTING KINASE 2 380 487 - -
Vivi2g03742 682 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Vivi2g03742 682 Pfam Leucine Rich Repeat 189 208 IPR001611 GO:0005515
Vivi2g03742 682 SUPERFAMILY L domain-like 23 234 - -
Vivi2g03742 682 Gene3D Transferase(Phosphotransferase) domain 1 489 677 - -
Vivi2g03742 682 Pfam Protein tyrosine and serine/threonine kinase 414 674 IPR001245 GO:0004672|GO:0006468
Vivi2g03742 682 FunFam Protein NSP-INTERACTING KINASE 2 488 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03742 Vivi-Chr2 147933918 147937379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03742 6 522 Miscellaneous Gene Families AT4G22730 56.742 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vivi2g03742 PK_Tyr_Ser-Thr 3.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03742 - - gmx:100777169 1016.14