Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03692 ATGGAGAGGTACAAATGCAAACTTTGCACAAGATCATTCACTAGTGGCAGAGCACTCGGTGGCCACATGAAAGCTCATTTAGCCACCCTCCCTTACCACCACCTTACTCCTCCATCTTCTTCTACCTTATTATCATTTTCATCTTCTCGGGAAAATTCAGATGAAAAAAGTTTAATAGATTCACATTCACATTCACTGGTTAGTTCGATTTCCGAAACTTCTCCGGAAGAAGAACTTGCTAAAACTCTCATGATGCTGTCAAGAGATAAATGGAAGATCAATGTTGTTGTCAAACAAGAATCACAATCACAAGAAATTGAAAGATCAATGGAAGAGATGGAGTTCAGAAAAAATAGTAGGAAGCACATATGTGACGAATGTGGGCAGAGCTTTCGAAGTTCAACAGCAATGAAAAGTCACAGAAACATTTGTCTTCAAAATGAAGTTGCAACAACAAGTGGTGGCGATCATAAAATATTCAAATGTTTGGTTTGTTCTAAGGTTTTTGGTTCTGGTCAAGCACTAGGTGGTCACAAGAAATCTCACCTTCATAAGAAAAAACTCTGTTTCATTGATCTCAACTTGCCACCTTCGCTACAAGAAAACGATGATAGCGAACAATGTGTTTTTTATGAGTAG 639 0.3818 MERYKCKLCTRSFTSGRALGGHMKAHLATLPYHHLTPPSSSTLLSFSSSRENSDEKSLIDSHSHSLVSSISETSPEEELAKTLMMLSRDKWKINVVVKQESQSQEIERSMEEMEFRKNSRKHICDECGQSFRSSTAMKSHRNICLQNEVATTSGGDHKIFKCLVCSKVFGSGQALGGHKKSHLHKKKLCFIDLNLPPSLQENDDSEQCVFYE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03692 212 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 54 IPR044303 GO:0006355
Vivi2g03692 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Vivi2g03692 212 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Vivi2g03692 212 SUPERFAMILY beta-beta-alpha zinc fingers 155 188 IPR036236 -
Vivi2g03692 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 143 IPR013087 -
Vivi2g03692 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vivi2g03692 212 SMART c2h2final6 160 182 IPR013087 -
Vivi2g03692 212 SMART c2h2final6 122 142 IPR013087 -
Vivi2g03692 212 SMART c2h2final6 4 26 IPR013087 -
Vivi2g03692 212 SUPERFAMILY beta-beta-alpha zinc fingers 3 141 IPR036236 -
Vivi2g03692 212 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vivi2g03692 212 Gene3D Classic Zinc Finger 95 187 - -
Vivi2g03692 212 Pfam C2H2-type zinc finger 3 28 - -
Vivi2g03692 212 Pfam C2H2-type zinc finger 160 183 - -
Vivi2g03692 212 Pfam C2H2-type zinc finger 122 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03692 Vivi-Chr2 146844063 146845000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03692 1 205 C2H2 Transcription Factor Family AT3G60580 29.897 5.16e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g03692 zf-C2H2_6 8.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03692 - - psat:127120612 308.916