Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03675 ATGTCAGGTGAGGAAGAGGTTGTTGCTGCAGTCGAGCCCGTTGCTGCTGCTGTAATTCCGGGTGAGCCAATGGACATCATGACTGCCCTACAACTTGTGCTTAGAAAGTCACGGGCTTACGGCGGTCTTGCACGAGGTCTTCATGAGGGTGCTAAAGTGATTGAGAAGCATGCTGCACAGCTCTGTGTTCTAGCCGAAGATTGTGACCAACCTGATTATGTCAAATTGGTGAAAGCCCTTTGTGCAGAACATAATGTTAGTTTGTTGACAGTTCCAAGTGCAAAGACCCTCGGAGAATGGGCTGGTTTGTGTAAGATTGACTCTGAAGGAAAAGCTAGGAAGGTTACTGGTTGCTCTTGTGTGGTTGTCAAGGATTTTGGAGAGGAGCATGAAGCCTATAATGTTGTTTTGCAGCACGTGAAAGCTAACTGA 432 0.4722 MSGEEEVVAAVEPVAAAVIPGEPMDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03675 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 29 122 IPR004038 -
Vivi2g03675 143 PANTHER 40S RIBOSOMAL PROTEIN S12 18 142 - -
Vivi2g03675 143 SUPERFAMILY L30e-like 23 141 IPR029064 -
Vivi2g03675 143 Gene3D - 5 143 IPR029064 -
Vivi2g03675 143 ProSitePatterns Ribosomal protein S12e signature. 29 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi2g03675 143 FunFam 40S ribosomal protein S12 9 143 - -
Vivi2g03675 143 PRINTS Ribosomal protein S12E family signature 88 109 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi2g03675 143 PRINTS Ribosomal protein S12E family signature 33 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi2g03675 143 PRINTS Ribosomal protein S12E family signature 47 63 IPR000530 GO:0003735|GO:0005840|GO:0006412
Vivi2g03675 143 PRINTS Ribosomal protein S12E family signature 113 126 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03675 Vivi-Chr2 146692800 146694245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03675 19 143 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 9.33e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03675 K02951 - gmx:100500093 257.299