Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03667 ATGACGGTTGAAAAAGAAGATTTGGGTTTGAGCCTTAGCTTAAACTTCCCTCAAAATCCACCAAAACCTCAATACCTCAATCTCATGTCTTCTTCTACCCATTCCTCTTCTCCTTCCACCTACAATCCTCACAAACCTTCATGGATCAATGCTTTCACTTCTTCAGATCGGGATTCAGAACCATGCAGAGGCGGCGAAGAACGACCGTTACTCCTCCGCGGAATCGACGTGAACCGGTTACCTTCCGACGCCAACTGTGAAGAAGAAGCCGGTGTTTCATCTCCAAACAGCACTGTTTCGAGCGTGAGCGGTAAACGAAGCGAAAGAGAAATCACTGGCGAAGATCTTGACATGGAGAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCCAGAAAAAAACTCAGACTCACCAAAGACCAATCTATTATCCTCGAAGAAAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTAGCACTTGCAAAGCAATTAGGTCTTCGTGCAAGACAAGTTGAAGTGTGGTTTCAAAATCGTAGGGCAAGGACTAAGCTGAAACAAACGGAGGTAGATTGTGAGTTTTTGAAGCGATGTTGTGAGAATCTAACGGATGAGAATCGGCGGTTGCAAAAAGAAGTACAAGAGCTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCTACGACACTTACCATGTGTCCTTCTTGTGAGCGTGTGGCTGTTCCATCATCAGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGTTCCGAATCTTGCTCGATCATTTCCCGTGTATCCAACGGTTCAGCATAGGCCGTTTGATACACTCCGTCCTAGTAGATCTTAA 882 0.4512 MTVEKEDLGLSLSLNFPQNPPKPQYLNLMSSSTHSSSPSTYNPHKPSWINAFTSSDRDSEPCRGGEERPLLLRGIDVNRLPSDANCEEEAGVSSPNSTVSSVSGKRSEREITGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMVPNLARSFPVYPTVQHRPFDTLRPSRS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03667 293 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Vivi2g03667 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 259 - -
Vivi2g03667 293 MobiDBLite consensus disorder prediction 84 112 - -
Vivi2g03667 293 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Vivi2g03667 293 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Vivi2g03667 293 SMART HOX_1 134 196 IPR001356 GO:0003677
Vivi2g03667 293 MobiDBLite consensus disorder prediction 1 44 - -
Vivi2g03667 293 MobiDBLite consensus disorder prediction 12 44 - -
Vivi2g03667 293 FunFam Homeobox-leucine zipper protein 18 122 197 - -
Vivi2g03667 293 Coils Coil 191 228 - -
Vivi2g03667 293 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Vivi2g03667 293 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Vivi2g03667 293 Pfam HD-ZIP protein N terminus 3 110 IPR006712 GO:0005634
Vivi2g03667 293 Gene3D - 140 190 - -
Vivi2g03667 293 CDD homeodomain 136 193 IPR001356 GO:0003677
Vivi2g03667 293 MobiDBLite consensus disorder prediction 89 106 - -
Vivi2g03667 293 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Vivi2g03667 293 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Vivi2g03667 293 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03667 Vivi-Chr2 146470622 146472341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03667 1 290 Homeobox Transcription Factor Family AT4G16780 62.585 1.96e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g03667 HD-ZIP_N 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03667 K09338 - gmx:100813367 425.246