Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03643 ATGGAACTTAAATTTAAGAGCCAAATTGGTTTTGTTTCTGTCATATTGCTCTTAGTCTTACCTATCCTGTGTAACTCTCAAGACTCTTACATTTGTTCTAGAGCAACGTATTATGGTAGCCCTGATTGCTATGGAAACCCAAGGGGAGCTTGTGGCTATGGTGATTATGGACAGACAGTAAATGATGGCAATGTCGCCGGAGTGTCTTGGTTATGGAAGAATGGATCTGGTTGTGGTGCATGCTACCAAGTGAGGTGCAAAATAGCAGGATTGTGTGATGAGAATGGAGCATATGTGGTGGTGACTGATTATGGTGTGGGAGATAGGACAGACTTCATCATGAGTCCGCGCGGCTATTCGAAATTGGGCAAAAATGCTGATGCATCTGCAGAACTCTTTAAATATGGTGTGGTGGATATAGAATATAAAAGAGTTCCTTGCAAATATAATGGTTATAACTTGTTGCTAAAGGTACATGAACGTAGCAAATACCCTCACTACTTGGCCATCATCATTCTCTATGTTGGTGGAACAAATGATGTAACTGGTGTTCAATTGTGGCAGGAGGATTGTCAAGAGTGGAGGCCAATGCGTAGGGTATTTGGGGCAGTGTTTGATGCTGAGAACCCTCCAAGAGGTGCGATCAAGTTGAGGTTCCAAGTGAGTGGTAGTGCTGGTCTTTATTGGGTGCAGTCCAAGAATGTTATCTCTAGTGATTGGGAAGCTGGTGCTGTTTATGACTCACAAATTCAGCTTGATTAA 762 0.4265 MELKFKSQIGFVSVILLLVLPILCNSQDSYICSRATYYGSPDCYGNPRGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIAGLCDENGAYVVVTDYGVGDRTDFIMSPRGYSKLGKNADASAELFKYGVVDIEYKRVPCKYNGYNLLLKVHERSKYPHYLAIIILYVGGTNDVTGVQLWQEDCQEWRPMRRVFGAVFDAENPPRGAIKLRFQVSGSAGLYWVQSKNVISSDWEAGAVYDSQIQLD 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03643 253 Gene3D - 148 249 IPR036749 -
Vivi2g03643 253 Pfam Expansin C-terminal domain 157 236 IPR007117 -
Vivi2g03643 253 CDD DPBB_EXLB_N 33 147 - -
Vivi2g03643 253 Gene3D - 23 147 IPR036908 -
Vivi2g03643 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vivi2g03643 253 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vivi2g03643 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Vivi2g03643 253 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Vivi2g03643 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vivi2g03643 253 PANTHER EXPANSIN-B3 18 251 - -
Vivi2g03643 253 SUPERFAMILY Barwin-like endoglucanases 16 151 IPR036908 -
Vivi2g03643 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Vivi2g03643 253 Pfam Lytic transglycolase 65 142 IPR009009 -
Vivi2g03643 253 SUPERFAMILY PHL pollen allergen 154 248 IPR036749 -
Vivi2g03643 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03643 Vivi-Chr2 145878065 145879704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03643 11 252 Expansin Gene Family AT4G17030 61.317 1.92e-111 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03643 - - ccaj:109800044 436.802