Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03624 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTACTCTTTCTCAACACCAAAAACATCCAAGAAGGTGAATATGATTTTTCATCACAACAACAGCAACAACAACCTGATCAATCAAATATGATGTTGTTCAACACTCCAGGCACTAACTCTAGAAAAAGAGGTAGAGAAACATCTCATAATATCATGAATCCATTCTCTTTACAATCTCATTCTCCTCATCTCATAGACATCACTCAACTCCATCATCATCAACAACAAAATCAACAACAACAAATTGTTTCCACTGGTTTAGGATTATCCTTCGACAATCAACAACAACATCAACAAAGACTACAATTACAACAACAACAGCAACAACATCAACAACAACACCAACAACATGGATGTCACACATCTCATTTCTTATCTCTATTGTCTCATGGCTTAGCCTCACAAATCAAACAACAAAAAGATGAAATAGACCAATTTCTTCAAGCCCAGGGAGAAGAGTTACAACGGACATTAGAGGAAAAAAGACAGAGAAACTACCGAGCAATAATAAAAACAGCAGAAGAAACGGTGGCGCGTAGATTAAGAGAAAAAGAACTCGAGGTCGAAAAGGCCACGCGCAGGAACATTGAGTTAGAATCACGCGCGGCTCAGCTTAGAGCCGAATCTCAAATTTGGCAAGCAAAAGCGAAAGCGCAGGAAGCAACGGCTATTTCTCTCCAAACGCAGCTGCATCAGGCTATGATGAGCTCCGGCGCAGAAAACAGAGGTGAAGAAGGGTGCGGGCTATCGTGCGCCGCGGAAGATGCGGAATCGGGTTATATTGACCCGGAAAGGGTAGTGTCGGGTCCAAAATGTAGAGGGTGTGGAAAACGGGTTGCGTCGGTGGTTGTGTTGCCGTGTCGTCATTTATGTGTTTGCACCGAATGCGACGCGCGTTTCCGTGTTTGTCCCGTTTGTCTCACCGTTAAAAATTCGACGGTTGAGATTTATCTATCTTAG 990 0.4293 MAVQAQYPSNVLFLNTKNIQEGEYDFSSQQQQQQPDQSNMMLFNTPGTNSRKRGRETSHNIMNPFSLQSHSPHLIDITQLHHHQQQNQQQQIVSTGLGLSFDNQQQHQQRLQLQQQQQQHQQQHQQHGCHTSHFLSLLSHGLASQIKQQKDEIDQFLQAQGEELQRTLEEKRQRNYRAIIKTAEETVARRLREKELEVEKATRRNIELESRAAQLRAESQIWQAKAKAQEATAISLQTQLHQAMMSSGAENRGEEGCGLSCAAEDAESGYIDPERVVSGPKCRGCGKRVASVVVLPCRHLCVCTECDARFRVCPVCLTVKNSTVEIYLS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03624 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 33 326 IPR017066 -
Vivi2g03624 329 Coils Coil 103 123 - -
Vivi2g03624 329 Coils Coil 184 225 - -
Vivi2g03624 329 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 265 328 - -
Vivi2g03624 329 MobiDBLite consensus disorder prediction 27 57 - -
Vivi2g03624 329 CDD mRING-HC-C3HC5_CGRF1-like 280 316 - -
Vivi2g03624 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 329 IPR013083 -
Vivi2g03624 329 Pfam Zinc finger, C3HC4 type (RING finger) 281 318 - -
Vivi2g03624 329 Coils Coil 154 174 - -
Vivi2g03624 329 MobiDBLite consensus disorder prediction 27 51 - -
Vivi2g03624 329 PIRSF SBP1_RNase_bind 1 329 IPR017066 -
Vivi2g03624 329 ProSiteProfiles Zinc finger RING-type profile. 282 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03624 Vivi-Chr2 145320794 145322575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03624 278 316 C3H Transcription Factor Family AT3G06140 41.860 7.78e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03624 K19042 - gmx:100779548 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03624 2 145320794 145322575 Vivi2g03624 2 145320794 145322575 ECH