Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03603 ATGGTTTGCACTGCCAATGATTTACAAGGGTGGAAGGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTATCTTCTACGATGTGAATGAAGCTTTGTCGGGGATCTCAAGTAGTCCCAAAGGCTTCCATGTTGCCGTAGTCGAGGTGAGTACAAGCTGCCCTGATGGAGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCGAACACTCATTGCCTGAATACGATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTCTTAACTAAACCGCTTTCCGAGGATAAGCTGAAAAATATTTGGCAGCATGTAGTTCACAAGGCATTCAATGCTGATAAAAACGCTACGTCTGAACCGCTAAAACCTGTCAAAGAATCCGTTGAGTCCATGTCGATAGATTTAGATAAGGTGTCCAAGTTTAGTGATAACGAACAAGAGCATTCTGCAGCGAGTGATAAATATCCGGCTCCTTCAACACCACAATTAAAACAAGTTGCGAGGTTAGTGGATGATGGTGATTGCCATGAGCAGACTAATTGCTCATTAGCAAAAGAAAGTGGAGAACATGATGGTAGTGATTGTAAATTTGTCGAAACTTCATGTGAGAATTTGAACGCCGAAAATTCTCAACCAACAAAACCTTTGATTAAGGAGGAAGAGGATTCTGCCAATGGTTCGAAGGGTGAGAGCGGTGTTTCAACGAATCACCAGAGTGAAAAGCTTCTTGGTAATGCTGGTGGTAATGCATCTCCAAATGAAACAAGTGTTCCTAAGAATTCATGTGAAAATAGAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCCGACCTGCACAAAAAATTCGTGAAGGCAGTTGAACAACTAGGCATTGATCAAGCTATTCCTTCTCGTATATTGGAGATAATGAAAGTCGACGGTTTGACAAGGCATAACGTTGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGACCTTGCACACGGATGAAGATCGAAAGTGGCCAAATCAAAGAGATCAAATGCAAAGAAACTATTGTATGCAAAGACCAATCATGGCCTATCCGCCATATCATTCTAATCACACCTATCCTCCAGCTCCTGTATATCCTATGTGGGGACAACCCGGAAGTCAAACAGCCGGTGTACCGATTTGGGCTCCTCCCGGTTATCCTATATGGCAACAACCTCAAGAAAATTGGCATTGGAGGCCTTATCCGCCCGGGATGCATGTGGATGCATGGGGTAACCCAATATTGCCACCTCCTCAAGCTCCTTGTTATCCCTACACTCAAAATATAACCGGATTGCAAAATGCGAAACCAACGGATTATAGATTTGGCATGCCACGTAATTCCTTCGAGCATTTTCCGGCAGAGGAAGTGGTGGACAAGGTTGTGAAAGAGGCAATAAACAAGCCATGGCTACCATTACCATTAGGACTCAAACCTCCATCAATGGACAGTGTTATGGCTGAACTCACCAAACAAGGCATCCCATTTAGCAAGGGAAAGGGTACTACTACTAATTCCAAACCATGCTGA 1629 0.4309 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSIFYDVNEALSGISSSPKGFHVAVVEVSTSCPDGGFKFLENAKDLPTIMTSNTHCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNADKNATSEPLKPVKESVESMSIDLDKVSKFSDNEQEHSAASDKYPAPSTPQLKQVARLVDDGDCHEQTNCSLAKESGEHDGSDCKFVETSCENLNAENSQPTKPLIKEEEDSANGSKGESGVSTNHQSEKLLGNAGGNASPNETSVPKNSCENRANRKKMKVDWTPDLHKKFVKAVEQLGIDQAIPSRILEIMKVDGLTRHNVASHLQKYRMHKRQTLHTDEDRKWPNQRDQMQRNYCMQRPIMAYPPYHSNHTYPPAPVYPMWGQPGSQTAGVPIWAPPGYPIWQQPQENWHWRPYPPGMHVDAWGNPILPPPQAPCYPYTQNITGLQNAKPTDYRFGMPRNSFEHFPAEEVVDKVVKEAINKPWLPLPLGLKPPSMDSVMAELTKQGIPFSKGKGTTTNSKPC 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03603 542 FunFam Two-component response regulator-like APRR2 17 143 - -
Vivi2g03603 542 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vivi2g03603 542 Gene3D - 18 146 - -
Vivi2g03603 542 Gene3D - 292 353 - -
Vivi2g03603 542 Pfam Myb-like DNA-binding domain 299 348 IPR001005 -
Vivi2g03603 542 SUPERFAMILY Homeodomain-like 295 352 IPR009057 -
Vivi2g03603 542 FunFam Two-component response regulator 292 354 - -
Vivi2g03603 542 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vivi2g03603 542 MobiDBLite consensus disorder prediction 232 295 - -
Vivi2g03603 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 293 352 IPR017930 -
Vivi2g03603 542 MobiDBLite consensus disorder prediction 167 186 - -
Vivi2g03603 542 NCBIfam myb-like DNA-binding domain, SHAQKYF class 296 351 IPR006447 GO:0003677
Vivi2g03603 542 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 528 IPR044825 GO:0003700|GO:0045893
Vivi2g03603 542 MobiDBLite consensus disorder prediction 253 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03603 Vivi-Chr2 144722455 144727194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03603 1 527 Response Regulator Gene Family AT4G18020 48.301 5.84e-134 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi2g03603 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03603 - - gmx:100784905 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03603 2 144722455 144727194 Vivi1g02629 1 55604761 55609590 PCT