Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03585 ATGATGGAAATTGTGTCCCCCATCTACGTACCTGAACATGAACTTGAGGATCTCAGTTTCTTTCATCAATACCCTATGGATTCTCTTTCATCTCCATTTGACAACTTTGACTTCAACTTTGACAACAACTACGAAACAACACCAAATTGTTTACCACTTGAAACTCATCCTGATGATCACTACGTTGCTCAAACAAGACCAACCAAGAAGATCAAGACTTTAAGTGACACCGAACAAGCCGGTGATTACTTGATAGCCTCAAACCCTAGACCTACTTCCTATTCATCACCTCAACTCATTTCTTTTGAGCACTTCAATGCAACATCAATCGCTAATTCTAACGAACTTTACAATCTCGATTATGCTGAAGTGAAACCTAAACTAGAGAAAGGGTGTAACGGAAACAAAGATTTTGCTGTAAATTATGATATCCGAGTAAATCAGACGAGGAACTCAACTCAAGCAAAAGAACATGTAATGGCTGAAAGAAAACGAAGGGAAAAGCTCACCAGAAGTTTCATTGCTCTTTCTGCCATCGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCTGTGCTGGGAGATGCAATAAGCTATATGAAAAAACTACAAACACGTTTGCATACATTAGAGGCACAAGCTGAAGACAACAAAAAGACTGGATCTGCAATCCAAGTGAAGAGATCGGTTATATTCACTGATAATGATGATGATGATGACAGCAGCAACACCAACAACCAAACACTTCCTGGAATCGAAGTTAGAGTTTCAAGGAAAGATGTACTCATCAAAATTCAATGTGACAAACACAAGGGACGTGCCTCTACCTCTACGGTACTAGGAAAACTAGAAACCCTAAATCTCACTGTCCAAAGTAGTACCTTATTGCCCTTCGGAAACAACATTGTTGATTTAACTATTGTAGCTCAGATGAACGAGGAAAACTGTGTGAAAGCAAAGGAACTTCTAGGAAGCATACAACATGCATTAATCATCAATAATAATTAA 1005 0.3891 MMEIVSPIYVPEHELEDLSFFHQYPMDSLSSPFDNFDFNFDNNYETTPNCLPLETHPDDHYVAQTRPTKKIKTLSDTEQAGDYLIASNPRPTSYSSPQLISFEHFNATSIANSNELYNLDYAEVKPKLEKGCNGNKDFAVNYDIRVNQTRNSTQAKEHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAISYMKKLQTRLHTLEAQAEDNKKTGSAIQVKRSVIFTDNDDDDDSSNTNNQTLPGIEVRVSRKDVLIKIQCDKHKGRASTSTVLGKLETLNLTVQSSTLLPFGNNIVDLTIVAQMNEENCVKAKELLGSIQHALIINNN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03585 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vivi2g03585 334 PANTHER BHLH TRANSCRIPTION FACTOR 21 329 - -
Vivi2g03585 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 215 IPR036638 GO:0046983
Vivi2g03585 334 Gene3D - 144 219 IPR036638 GO:0046983
Vivi2g03585 334 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Vivi2g03585 334 Coils Coil 199 219 - -
Vivi2g03585 334 SMART finulus 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03585 Vivi-Chr2 144219859 144221584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03585 2 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.551 1.93e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03585 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03585 - - vvo:131646947 500.745