Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03583 ATGATGAAAATTGTGCCCCCCATCTATGTGCCTGAACTTGGATTTGAGGATCTCAGTTTCTTTCACCAATACCCTATGGATTCTCTTGCATCTCCATTTGACAACTTTGGCTTCAACTATGAGAACAACTACGAAACAGCCCCAAATTGTTTACCACTTGAAACTCACCCTGATAATCACTATGTTGCTCCAACAAGACCAACCAAGAAGATCAAGACATCGATAAACCCTCCTTCCTATTCATCACCTCAACTCATTTCTTTTGAGCACTTCAATGCAACACCAGTTGCTTCTACCGAACTTTACGACCTCGATTATTCTGATGTAAAGCCTAAACTCCAGAATGGGTGCAATGAAAACAAAGAAATTGCAGCAAATTATGATATCCGAGTGAATCAGCCGAGGAACACAATTCAAGCAAAAGAACATGTAGTGGCTGAGAGAAAACGAAGAGAAAAGCTCACCAGAAGTTTTATTGCTCTTTCTGCCATCGTTCCTGGCCTTAAGAAGATGGATAAAGCTTCTGTACTGGGAGATGCAATAACCTATATGAAAAAACTACAAGCACGTTTGCATACACTAGAGGCACAAGCTGAACACAACAAAAAAACTGGATCTGCAATACAAGTAAAGAGATCTGTTATCTTTACTGATAACCATGATGATGATGACAGCAACAACTCCAACAACCAGACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAGATTCAATGTGACAAACACAAGGGACGTGCCTCTACCTCTACGGTACTAGGAAAACTAGAAACCCTAAATCTCACAGTTCAAAGTAGTAACTTATTGCCCTTCGGGAACAACATTGCTGATCTAACTATTGTTGCTCAGATGAACGAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGAAATGCATTAATCATCAATAATAATTAA 960 0.3969 MMKIVPPIYVPELGFEDLSFFHQYPMDSLASPFDNFGFNYENNYETAPNCLPLETHPDNHYVAPTRPTKKIKTSINPPSYSSPQLISFEHFNATPVASTELYDLDYSDVKPKLQNGCNENKEIAANYDIRVNQPRNTIQAKEHVVAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAITYMKKLQARLHTLEAQAEHNKKTGSAIQVKRSVIFTDNHDDDDSNNSNNQTLPEIEVRVSRKDVLIKIQCDKHKGRASTSTVLGKLETLNLTVQSSNLLPFGNNIADLTIVAQMNEENCVTAKDLLGSIRNALIINNN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03583 319 Gene3D - 131 204 IPR036638 GO:0046983
Vivi2g03583 319 Pfam Helix-loop-helix DNA-binding domain 142 188 IPR011598 GO:0046983
Vivi2g03583 319 SMART finulus 144 193 IPR011598 GO:0046983
Vivi2g03583 319 Coils Coil 184 204 - -
Vivi2g03583 319 PANTHER BHLH TRANSCRIPTION FACTOR 42 314 - -
Vivi2g03583 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 202 IPR036638 GO:0046983
Vivi2g03583 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03583 Vivi-Chr2 144203000 144206037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03583 2 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.641 3.38e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03583 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03583 - - vvo:131646947 564.688