Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03576 ATGGATTCGCGTGAACCACCACATGCTCCTCCTCATCACCCTCAGGGTCACCACTTTCAACCTCCGTCGAACGTTGTCTTGGTGGGACCCAATCCGTTCACCAACACTGCCCCGACTACCATGATGGCACCTGCCACTGCTCGATTCCCTCTCTTCAACATGAACGCTAACCCTGCTAACCCTCCTCCTCATTCCGAGCCTTTCACCACCATTGCCACCACCACCACCACCACCACCAATGTCAACACTGCCGCCACCACCAACACTGTTCCTCCTTCCACCTTGGTACCATATGTTGCTGGCTCCTCTGAGTCATTCAAGAGAAAGAGGGGCCGGCCAAGGAAGTATTTTCCTGATGACAGCACTGCTCTTGGGTTGGGCTCGGGTTCGGGCTCTGGCTCGGGTTCCGGGCAGGCTCTTGCTATGAACTCTCCTGACTCTTCAACTGCTAAGAAGAGTAAGAGGGGGAGAGGAAGGCCTCGTGGCTCTGTTAAGAAGAAGCTTGGAGATAATGGCTCTGCTTTCCAGCCTCATGTGATCATGGTGAATCATGGAGAGGACATTTCTGAAAAAGTTATGGCCTTTAGTCAAGAAAGAGCGGCACCTGATACGGATATGTGCATTGTTTCTGCTGAAGGTTCGATTGGCACGGTTGCCCTTCATCAGGCGGGGAGCATTGTGGTTTTTGAGGGCCAATTTGAAATTGTATCCCTGACAGCCCAGTCAGTAGAATCTGATGACGGCAGTGGCATTAAAAGAATGAGTAGCTTGAAGGTATCTGTAGGGGGTCCTGATTCACGCCTTTTGGGGGGTGTAGTTGCTGATAAGCTTGTTGCGGCATCGACAGTAAAGGTCATAATGGGCTGTTTTACTTTGGATGGCAAAAAGACTAGCTCGAACAATCAGAAATCTGGGCCGTCTTCAACCCCACCGTCCAATTTTGCTGCTTCTGGGACTCCAACTAGCCCTACATCTCAAGGGCCTTCATCTGAGTCCTCTGGTGACCATGAGAATAGTCCTTTTACTCAGGGACCTGGAATCTACAACAATGCCAGTCAGGTCGATCAAAACATGATGTTCCACCACCCGCAAAACTGGGCTCGCCAAACTCAGCAGTGA 1119 0.5121 MDSREPPHAPPHHPQGHHFQPPSNVVLVGPNPFTNTAPTTMMAPATARFPLFNMNANPANPPPHSEPFTTIATTTTTTTNVNTAATTNTVPPSTLVPYVAGSSESFKRKRGRPRKYFPDDSTALGLGSGSGSGSGSGQALAMNSPDSSTAKKSKRGRGRPRGSVKKKLGDNGSAFQPHVIMVNHGEDISEKVMAFSQERAAPDTDMCIVSAEGSIGTVALHQAGSIVVFEGQFEIVSLTAQSVESDDGSGIKRMSSLKVSVGGPDSRLLGGVVADKLVAASTVKVIMGCFTLDGKKTSSNNQKSGPSSTPPSNFAASGTPTSPTSQGPSSESSGDHENSPFTQGPGIYNNASQVDQNMMFHHPQNWARQTQQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03576 372 SMART AT_hook_2 107 119 IPR017956 GO:0003677
Vivi2g03576 372 SMART AT_hook_2 154 166 IPR017956 GO:0003677
Vivi2g03576 372 MobiDBLite consensus disorder prediction 295 372 - -
Vivi2g03576 372 CDD DUF296 176 288 IPR005175 -
Vivi2g03576 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 74 346 IPR039605 GO:0003680
Vivi2g03576 372 MobiDBLite consensus disorder prediction 83 172 - -
Vivi2g03576 372 ProSiteProfiles PPC domain profile profile. 172 311 IPR005175 -
Vivi2g03576 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 173 291 - -
Vivi2g03576 372 MobiDBLite consensus disorder prediction 125 149 - -
Vivi2g03576 372 Gene3D - 176 303 - -
Vivi2g03576 372 MobiDBLite consensus disorder prediction 83 100 - -
Vivi2g03576 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 176 290 IPR005175 -
Vivi2g03576 372 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03576 Vivi-Chr2 143942173 143945853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03576 106 296 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 42.647 7.51e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03576 - - cam:101504328 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03576 2 143942173 143945853 Vivi1g02654 1 56215894 56225026 PCT