Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03574 ATGGTGGCTACAGATATTGCCCTTCTTTCTATGACTACTACTACTCAGATCCAAAAATCATCACAATCACAATCAAACCCTAACATCACCACAACCACCACCACACCATCATCATCAACTTGGATGTGGAACCCTAAACAACAACAAGAAGATGAAGATTCATGGGAGGTAAGAGCTTTTGCAGAAGACACAAGGAACATCATGAACGCAACATGGCCACCAAGATCTTACACCTGCACTTTTTGTAGAAGAGAGTTCCGGTCAGCTCAAGCTCTTGGCGGTCATATGAACGTCCACCGCCGAGACCGTGCTCGTCTCCATCAAAATCAACCACCGTTAAATCCTTCTTCTCAGTTCATACATATTCCTCCTCAAGAGCTTGTTAATGCTGGATTGTGCCTTTTTTACCATTCACCAAACCCTAATATTTCTTCCTTCAATGATTCTAATGGAGATCAATCTCCTTCAACTCTTCTCTCTATCTCATCATCATCTTATCCAACAAACAACTTGATGATGCAAAGGCAAATGCAAACTTGTTCTCCTACACCTTTTCATTTTCAGGCTAATTCAGCTCGAAACTTTATCAATAATAGCATCTCTTCTTTTTCTAACAAACCTGCTATCTGCACCTCCATAGACGATAAGGTTCATGAAATTGAAGAACTCGATCTTGAGCTACGTTTGGGGAACAAGCCAGCACCGACATGA 711 0.4149 MVATDIALLSMTTTTQIQKSSQSQSNPNITTTTTTPSSSTWMWNPKQQQEDEDSWEVRAFAEDTRNIMNATWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQNQPPLNPSSQFIHIPPQELVNAGLCLFYHSPNPNISSFNDSNGDQSPSTLLSISSSSYPTNNLMMQRQMQTCSPTPFHFQANSARNFINNSISSFSNKPAICTSIDDKVHEIEELDLELRLGNKPAPT 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03574 236 MobiDBLite consensus disorder prediction 18 51 - -
Vivi2g03574 236 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vivi2g03574 236 PANTHER OS07G0101800 PROTEIN 49 233 - -
Vivi2g03574 236 SMART c2h2final6 77 99 IPR013087 -
Vivi2g03574 236 Gene3D Classic Zinc Finger 72 120 - -
Vivi2g03574 236 MobiDBLite consensus disorder prediction 18 48 - -
Vivi2g03574 236 Pfam C2H2-type zinc finger 77 101 - -
Vivi2g03574 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Vivi2g03574 236 SUPERFAMILY beta-beta-alpha zinc fingers 74 104 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03574 Vivi-Chr2 143923921 143924917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03574 38 233 C2H2 Transcription Factor Family AT4G17810 41.584 3.33e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g03574 zf-C2H2_6 4.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03574 - - vvo:131646956 323.939