Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03562 ATGGATAAAGTAAACACATCATCAACTAGCTGGTTATCTGATTTGATGTTGGATGAAATGGAGATGGAGGGTTGTGATTTGTTCCAACAAAATTTGTTTGATGATGAAGATTTATTCTCAGATGACATAGCAAGTGTTCTTCAACAACAACAACAACAACAACCTTTGTCTCCTGTTTCTTCTCACTCTTCAACTACTTCTCAGATTTTGTCTTTTCAGAACACAACAACTACTCGTTTTCATGCTTTTGATTGTGCCTCAAACACAAAGCAAAACGAGGTTGTTACAGAACTTGCTCAAAATGAAAACGTTGTTAAGAGGTTTTTGGGTCATAATAATAACAATAATAAAGATCATATAATAGCAGAGAGAAAGAGAAGAGAGAAACTAAACAAAGGCTTAATAGCTTTAGCTTCTCTTATTCCTGGATTAAAGAAGATGGACAAGGCATCAGTGCTAGGAGATGCTATCAAGTATCTGAAACAACTCCAAGAACGTTTGAAGGTGTTAGAAGATCAACATAACAAGAATAGTCCTGTTGTTGAGTCTGTAGTGACGGACAACAAACCGGGGGTAATTCATGAATCATGGGGTGATGATGGGTCTTCTGAATCAGTCTCCCATGTGGATGCCAGAGTTTTGGACAAGGACGTTCTCATAAGGATTCTCTGCCAAAAGCAAAAGGGTATTTTGGTCAAATTATTGGACGAGATTCAAAAGCTTCATCTCTTTGTTGTTACCAGCAATGTTCTACCTTTTGGGGATTCTCTCAACATAACCATTGTTGCCAAGATGGAAACGGCGTACAACTTGACCATAAATGATCTTGTAAAAAACCTACGAGTTGCTGCATTGAAAACCATGTCGTTTATCGTAATGTGA 882 0.3753 MDKVNTSSTSWLSDLMLDEMEMEGCDLFQQNLFDDEDLFSDDIASVLQQQQQQQPLSPVSSHSSTTSQILSFQNTTTTRFHAFDCASNTKQNEVVTELAQNENVVKRFLGHNNNNNKDHIIAERKRREKLNKGLIALASLIPGLKKMDKASVLGDAIKYLKQLQERLKVLEDQHNKNSPVVESVVTDNKPGVIHESWGDDGSSESVSHVDARVLDKDVLIRILCQKQKGILVKLLDEIQKLHLFVVTSNVLPFGDSLNITIVAKMETAYNLTINDLVKNLRVAALKTMSFIVM 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03562 293 PANTHER BHLH TRANSCRIPTION FACTOR 10 287 - -
Vivi2g03562 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 176 IPR036638 GO:0046983
Vivi2g03562 293 SMART finulus 120 169 IPR011598 GO:0046983
Vivi2g03562 293 Coils Coil 153 173 - -
Vivi2g03562 293 Pfam Helix-loop-helix DNA-binding domain 119 164 IPR011598 GO:0046983
Vivi2g03562 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Vivi2g03562 293 Gene3D - 110 178 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03562 Vivi-Chr2 143746587 143749358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03562 58 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.169 2.86e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03562 HLH 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03562 - - tpra:123910022 259.225