Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03556 ATGGAAGTTGAAGCTAGCAAAATGACACCAAATGATGAGTCATGGACAAGTTGGTTGTGTGATTTGGATCCAGAAGATTATAAAATCATCAATGACATGAACATGGTACCTTTGTCCCAAGACCATAACATCTTGCAACAATCTTTGTCTAGTGGTAGCCATTGTTCTCAAACAACCTCAAGCACTATGAGTAATTCCTCAGGAGATGTTGTTAACAGCTGTGAGAGACCTTCAAAGACACTCAAGACTAATAGCCCTTCAAATATAAGGTACCCTTTTTCACAAAAGAATGATTCTTCTCTTTCCTACATTCTTTGTTTCGACAATCCAGAACCAGAAGCAGAAGCAGAACAAGAACTAGGACCAAAAGGTAAGATTTTGAATCATGGGAAGTGTTTAACTTCAAAAGGGTTTTTGGAGAATCAAAAAAAGGAACCTAAAAGAGGTATTCTAGAGAGTAAAAAGACTGATGCAGTTGCAAAACATGCTCAAGATCATATAATTGCTGAGAGAAAGAGAAGAGAGAAACTTAGTCAACAGTTCATAGCTCTTTCAGCACTGATTCCAGATTTAAAAAAGATGGATAAGGCTTCTGTGTTAGGAGATGCTATAAAGTATATGAAACAGCTTCAAGAACAAGTGAAGATATTGGAACAGAAGAACCAAAGGAACAACATTGAATCTGTGGTTTATGTTGAGAAGACCAAGTCATGTTCTTCAGATGAAGATGTTTCAGTTTCAGACACTTCCTCAAATACTGGAAATGGTGGTAATTGTTGTCACCCTTCAAAGATGAATCGGTCACTGCCAGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATAAGAATTCACTGTGAGAAAGAAAAGGGTGTGTTGATGAAGATAATCCAAGTGATAGAGAATCTTCACCTTTCTGTCATTAGTAATAGTACCTTGCTTTTTGGAACCATGAAACTTGACATTACCATCATAGCTCAGATGGATGATGAATTCAGCTTAAGTGTGCAGGAGCTAGTTAGAGCCATTCGAGTCGGACTGTTGCAATTCATGTAG 1059 0.3787 MEVEASKMTPNDESWTSWLCDLDPEDYKIINDMNMVPLSQDHNILQQSLSSGSHCSQTTSSTMSNSSGDVVNSCERPSKTLKTNSPSNIRYPFSQKNDSSLSYILCFDNPEPEAEAEQELGPKGKILNHGKCLTSKGFLENQKKEPKRGILESKKTDAVAKHAQDHIIAERKRREKLSQQFIALSALIPDLKKMDKASVLGDAIKYMKQLQEQVKILEQKNQRNNIESVVYVEKTKSCSSDEDVSVSDTSSNTGNGGNCCHPSKMNRSLPEVEARVSEKNVLIRIHCEKEKGVLMKIIQVIENLHLSVISNSTLLFGTMKLDITIIAQMDDEFSLSVQELVRAIRVGLLQFM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03556 352 Gene3D - 160 231 IPR036638 GO:0046983
Vivi2g03556 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
Vivi2g03556 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Vivi2g03556 352 MobiDBLite consensus disorder prediction 242 262 - -
Vivi2g03556 352 Coils Coil 200 227 - -
Vivi2g03556 352 CDD bHLH_AtNAI1_like 162 234 - -
Vivi2g03556 352 PANTHER BHLH TRANSCRIPTION FACTOR 41 350 - -
Vivi2g03556 352 SMART finulus 167 216 IPR011598 GO:0046983
Vivi2g03556 352 MobiDBLite consensus disorder prediction 242 264 - -
Vivi2g03556 352 MobiDBLite consensus disorder prediction 49 92 - -
Vivi2g03556 352 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03556 Vivi-Chr2 143611535 143613350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03556 163 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.421 1.13e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03556 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03556 - - psat:127120520 513.842