Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03554 ATGATGGAAATTGTGCCCCCAAACTATGTGCCTGAACTTGAATTTGAGGATCTCAGTTTCTTTCATCAATACCCTATGGCTATGGATTCTCTTTCATGTCCATTTGACAACTTTGACTTCAACTTTGACAACAACTACGAAACAGCACCAAATTGTTTACCACTTGAAACTCATCCTGATGATCACTACGTTGCTCAAACAAGACCAACCAAGAAGATCAAGACTTTAAGTGACACGGAACAAGCCGGTGATTACTTGATAGTCTCAAACCGTAGACCTACTTCCTATTCATCACCTCAACTCATTTCTTTTGAGCACTACAATGCAACATCAGTTGTTTCTTGCGAACTTTACGATCTCGATTATTCTGATGTAAAACCTAAACTCCAGAAAGGGTGTAATGTAAACAAAGAAATTGCCGCAAATTATAATATCCGAGTGAATCAGACGAGGAACACGATTCAGGCAAAAGAACATGTAGTGGCTGAGAGAAAACGAAGAGAAAAGCTCACCAGAAGTTTCATTGCTCTGTCTGCCATCGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCTGTGCTGGGAGATGCAATAACCTATATGAAAAAACTACAAGCACGTTTGCATACACTAGAGGCACAAGCTGAAGACAACAAAAAGACTGGATCTGCAATACATGTGAAGAGATCTGTTATCTTCACTGATAACCATGATGATGATAACATTAACTCCAACAACCAGACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAGATTCAATGTGACAAACACAAGGGACGTGCCTCTACTTCTACGGTACTAGGAAAACTAGAAAGCCTAAATCTCACAGTCCAAAGTAGTAACTTATTGCCCTTCGGAAACAACATTGTTGATCTAACTATTGTTGCTCAGATGAACGAGGAAAACTGTGTGAAAGCAAAGGAACTTCTAGGAAGCATACGACATGCATTAATCATCAATAATAATTAA 1005 0.391 MMEIVPPNYVPELEFEDLSFFHQYPMAMDSLSCPFDNFDFNFDNNYETAPNCLPLETHPDDHYVAQTRPTKKIKTLSDTEQAGDYLIVSNRRPTSYSSPQLISFEHYNATSVVSCELYDLDYSDVKPKLQKGCNVNKEIAANYNIRVNQTRNTIQAKEHVVAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAITYMKKLQARLHTLEAQAEDNKKTGSAIHVKRSVIFTDNHDDDNINSNNQTLPEIEVRVSRKDVLIKIQCDKHKGRASTSTVLGKLESLNLTVQSSNLLPFGNNIVDLTIVAQMNEENCVKAKELLGSIRHALIINNN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03554 334 Gene3D - 146 220 IPR036638 GO:0046983
Vivi2g03554 334 Coils Coil 200 220 - -
Vivi2g03554 334 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Vivi2g03554 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Vivi2g03554 334 SMART finulus 160 209 IPR011598 GO:0046983
Vivi2g03554 334 PANTHER BHLH TRANSCRIPTION FACTOR 36 329 - -
Vivi2g03554 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 216 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03554 Vivi-Chr2 143554128 143556260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03554 150 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 45.181 8.62e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03554 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03554 - - vvo:131646947 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03554 2 143554128 143556260 Vivi1g02662 1 56573982 56578272 PCT