Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03553 ATGTTTTTTAACAATATTTCAGTGCATGCTTTATACCACACCGAATCAAATCGAATTTTTAGGAACAAAACAAAACTGAAGATGATGAAAATTGTGTCCCCCATCTATGTGCCTGAACTTGGTTTTGAGGATCTCAATTTCTTTCACCAATACCCTATGGATTCTCTTTCATCTCCATTTGACAACTTTGACAACAACTACGAAACAGCACCAAATTGTTTACCACTTGAAACTCATCCTGATGATCATTACGTTGCTCAAACAAGATCAACCAAGAAGATCAAGACTTCGATAAACCTTCCTTCATATTCATCACCTCAACTCATTTCTTTTGAGAACTTCAATGCAACACCAGTTGCTTCTAGCGAACTTTACGACCTCGATTATTCTGATGTAAAGCCTAAACTCCAGAAAGGGTATAATGAAAACAAAGAAATTGCCGCAAATTATGATATCCGAGCGAATCAGACAAGGAACACAACTCAAGCAAAAGAACATGTAGTGGCTGAGAGAAAACGAAGAGAAAAGCTCACCAGAAGTTTCATTGCTCTTTCTGCCATCGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCGGTGTTGGGAGATGCAATAACCTATATGAAAAAACTACAAGCACGTTTGCATACACTAGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCTGCTATACAAGTGAAGAGATCTGTTATCTTCACTGATCACCATGATGATGATGACAGCAGCAACTCCAACAACCAAACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAGATCCAATGCGAAAAACACAATGGACGTGCCTCTACCTCTACGATACTCGGAAAATTAGAAACCCTAAACCTTACAGTTCAAAGTAGTAACTTATTGCCCTTTGGAAACAACATTGCTGATCTAACTATTGTAGCTCAGATGAACGAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGAAATGCATTAATCATCAATAATAATTAA 1029 0.3819 MFFNNISVHALYHTESNRIFRNKTKLKMMKIVSPIYVPELGFEDLNFFHQYPMDSLSSPFDNFDNNYETAPNCLPLETHPDDHYVAQTRSTKKIKTSINLPSYSSPQLISFENFNATPVASSELYDLDYSDVKPKLQKGYNENKEIAANYDIRANQTRNTTQAKEHVVAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAITYMKKLQARLHTLEEQAEDNKKTGSAIQVKRSVIFTDHHDDDDSSNSNNQTLPEIEVRVSRKDVLIKIQCEKHNGRASTSTILGKLETLNLTVQSSNLLPFGNNIADLTIVAQMNEENCVTAKDLLGSIRNALIINNN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03553 342 Gene3D - 152 227 IPR036638 GO:0046983
Vivi2g03553 342 SMART finulus 167 216 IPR011598 GO:0046983
Vivi2g03553 342 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Vivi2g03553 342 PANTHER BHLH TRANSCRIPTION FACTOR 50 337 - -
Vivi2g03553 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 223 IPR036638 GO:0046983
Vivi2g03553 342 Coils Coil 207 227 - -
Vivi2g03553 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03553 Vivi-Chr2 143513624 143515620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03553 103 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.408 1.57e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03553 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03553 - - vvo:131646947 665.225